PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00156058001
Common NameGSBRNA2T00156058001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 411aa    MW: 47242.1 Da    PI: 5.8777
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00156058001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.5e-11217267754
                          HHHHHHHHHHHHHHHHHHCTSCCC......TTS-STCHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPkas...kapskKlsKaeiLekAveYIksL 54 
                            Er+RR+riN+++  Lr ++P+ +    ++s  ++K  +L  Av+YI++L
  GSBRNA2T00156058001 217 HSERKRRERINQRIYALRAVVPNVTkvlPENSFQMNKNGTLSDAVDYINQL 267
                          57*********************55599999999***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.4E-1612156IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000833.74E-10208272No hitNo description
SuperFamilySSF474594.84E-14208280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.227210267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-11216273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-12217268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-9217267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MMMMRGGERV KEFLRPFVDS REWDFCVIWK LGDDPSRRFI EWVGCCCSGS YIDKNIKHEH  60
VEEEETQKMS SICRDEDNKH HIRTLACEAL SRFPLFMPLY PGIHGEVVMS KSPKWLVNSG  120
PGSKQDIFST RVLVPVRDGL VELFSFIMKP VDESLVDLII SHCNTTFEPF PEQTLPFRII  180
SKEEESMLMH KEEDVVMQNT MDDKKVAKEN FKSKNLHSER KRRERINQRI YALRAVVPNV  240
TKVLPENSFQ MNKNGTLSDA VDYINQLLVE KQKLEDELRG INEIKSRRIA AEEESAIANP  300
HTEKVASRLN KIVNNEVSLE VYETGEGGFL IRVAQEHKQD GFKRLVEAVD SCGLEIIDVN  360
FTRLDLRVMT VLNVNANKDG TTPENLRDLL LKMMTITSEN PYAESLRQCT *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218223ERKRRE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00156058001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013676325.10.0transcription factor bHLH90-like
SwissprotQ0WNR20.0BH090_ARATH; Transcription factor bHLH90
TrEMBLA0A3P5YCQ10.0A0A3P5YCQ1_BRACM; Uncharacterized protein
STRINGBra019914.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69852742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.10.0bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]