PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00155696001

Common Name

GSBRNA2T00155696001, LOC106368284, LOC106368285

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 302aa MW: 33547.9 Da PI: 10.3772

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00155696001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.8	8e-15	26	126	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkr..tses 75 +W+++ + +Li+a ++ +l+rg+l++++W+ev++++ ++ + +r+ +qCk++++ l+k+yk +k++ ++ + + GSBRNA2T00155696001 26 CWSEEATFTLIQAWGSRYVNLSRGSLRQNHWQEVANAVndrhfntgrnvsaAKSQPSRTDVQCKNRIDTLKKKYKVEKARVSGAggSGGY 115 7***********************************************999999***************999987665447899 PP trihelix 76 sstcpyfdqle 86 +st+p+f++l+ GSBRNA2T00155696001 116 VSTWPFFSDLD 126 9******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.0E-24	24	128	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MKHAVNGSFS PGSSRPSPST LSREDCWSEE ATFTLIQAWG SRYVNLSRGS LRQNHWQEVA 60 NAVNDRHFNT GRNVSAAKSQ PSRTDVQCKN RIDTLKKKYK VEKARVSGAG GSGGYVSTWP 120 FFSDLDDLLG ETFPTSSATP SLQMTIVPVP VAPRSAIPRR PAPAPAIMRI GGDNLLGYRG 180 NLNAFAAAAA AAASSPAYED DSDGSRSRSS GGKRKREEKQ GYKEVAEAIE RLREIYERVE 240 ERKRKEMVEL EKQRMRFAKE LECHRMQLFT EMRVRLHKLR RTKGPTSSAL GYGMMDLPSY 300 L*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.14012	1e-114	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00155696001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189221	0.0	AC189221.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010L05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013600796.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
Refseq	XP_013663657.1	0.0	trihelix transcription factor ASIL2-like
Refseq	XP_013663658.1	0.0	trihelix transcription factor ASIL2-like
TrEMBL	A0A0D3DU74	0.0	A0A0D3DU74_BRAOL; Uncharacterized protein
STRING	Bo8g092770.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9635	23	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	1e-102	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Entrez Gene	106368284 \| 106368285

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]