PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00155688001

Common Name

GSBRNA2T00155688001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 200aa MW: 22526.1 Da PI: 6.4009

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00155688001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.8	1.2e-29	69	127	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+ + itY +Hnh+ GSBRNA2T00155688001 69 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPSKLMITYACDHNHP 127 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.4E-31	60	129	IPR003657	WRKY domain
PROSITE profile	PS50811	31.502	63	129	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-25	64	129	IPR003657	WRKY domain
SMART	SM00774	6.4E-34	68	128	IPR003657	WRKY domain
Pfam	PF03106	6.2E-25	70	127	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MHRRGIQESD EEDETYNDVV PDSPSSCEDS KILKPTPKKS RRNMEKRVVS VPIVDVEGSK 60 SRGEVYPPSD SWAWRKYGQK PIKGSPYPRG YYRCSSSKGC PARKQVERSR VDPSKLMITY 120 ACDHNHPFPS AANNKSHHHR TTAVVLKTAK KEENMEEEEE EEEATIVAEE PAGLDLSHVD 180 SSLLLGGCYS ELPEFGWFK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	8e-22	46	130	6	80	Disease resistance protein RRS1
5w3x_D	8e-22	46	130	6	80	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00155688001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU912413	0.0	EU912413.1 Brassica napus WRKY69-1 transcription factor (WRKY69-1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013602536.1	1e-145	PREDICTED: probable WRKY transcription factor 69 isoform X1
Refseq	XP_013663666.1	1e-145	probable WRKY transcription factor 69 isoform X1
Refseq	XP_013663669.1	1e-145	probable WRKY transcription factor 69 isoform X1
Swissprot	Q93WV5	1e-111	WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBL	A0A0D3DU81	1e-144	A0A0D3DU81_BRAOL; Uncharacterized protein
STRING	Bo8g092840.1	1e-145	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12478	19	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58710.1	2e-97	WRKY DNA-binding protein 69

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]