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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00155517001 | ||||||||
Common Name | GSBRNA2T00155517001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 261aa MW: 29273.9 Da PI: 7.3119 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00014 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C ksF + L H+r+H GSBRNA2T00155517001 4 YKCKFCFKSFVNGRALGGHMRSH 26 9*********************9 PP | |||||||
2 | zf-C2H2 | 16.3 | 2.8e-05 | 152 | 174 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cgk+F++ L H +H GSBRNA2T00155517001 152 YTCETCGKVFKSYQALGGHRASH 174 9************9999998887 PP | |||||||
3 | zf-C2H2 | 10.8 | 0.0015 | 197 | 219 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++F + L H r+H GSBRNA2T00155517001 197 HECPICLRVFASGQALGGHKRSH 219 79*****************9999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.78E-10 | 3 | 26 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.9E-4 | 3 | 26 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.016 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.6E-6 | 4 | 27 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.138 | 4 | 26 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.78E-10 | 147 | 174 | No hit | No description |
SMART | SM00355 | 0.011 | 152 | 174 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.24 | 152 | 179 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.7E-11 | 152 | 176 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 154 | 174 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.23 | 197 | 219 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.2E-12 | 197 | 219 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.058 | 197 | 219 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 199 | 219 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MESYKCKFCF KSFVNGRALG GHMRSHMPTL HKFSIQEEEE RPSQLGDESK SDVSSSEEGQ 60 EQKISGSREE KHPTMDDDGS ETESSRDIKM KTSQLGYKNE PEAEPPQSSA SDTTTEEDLA 120 LCLMMLSRDK WRKNKVSDKM INRATTTTKG RYTCETCGKV FKSYQALGGH RASHKKNRVT 180 NKTDYDIVVV AAEKRIHECP ICLRVFASGQ ALGGHKRSHG LGNLSVNPHH QVRMESVKEK 240 MIDLNLPAPT EEEEVSMVFQ * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00155517001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189319 | 1e-134 | AC189319.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036H01, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013712128.1 | 0.0 | zinc finger protein ZAT9-like | ||||
Swissprot | Q9M202 | 1e-114 | ZAT9_ARATH; Zinc finger protein ZAT9 | ||||
TrEMBL | A0A0D3DUM8 | 0.0 | A0A0D3DUM8_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6GD65 | 0.0 | A0A3P6GD65_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g095300.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1465 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 1e-110 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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