PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00155366001 | ||||||||
Common Name | GSBRNA2T00155366001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 180aa MW: 20228.5 Da PI: 9.997 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00029 | 48 | 70 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+Fs+ L H +H GSBRNA2T00155366001 48 FECKTCNKRFSSFQALGGHRASH 70 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 18.6 | 5.1e-06 | 94 | 116 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++CgksF + L H+r+H GSBRNA2T00155366001 94 HECTICGKSFGTGQALGGHMRRH 116 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.18E-9 | 47 | 116 | No hit | No description |
Pfam | PF13912 | 1.5E-12 | 47 | 72 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.533 | 48 | 75 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.093 | 48 | 70 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 50 | 70 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.2E-6 | 80 | 117 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 2.0E-13 | 93 | 118 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.824 | 94 | 121 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0039 | 94 | 116 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 96 | 116 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MKRERSEFEE SIKNLDIAKC LMILSQTSSM VKQIGVNQYA ESNSSNRFEC KTCNKRFSSF 60 QALGGHRASH KKPKLTVDQK VVKQYLTKEG TQAHECTICG KSFGTGQALG GHMRRHRSSM 120 MVEPSELISP VIHNMPVLKR CSSSKRVLSL DLNLTPLEND LEILFGKTFF PNIDMKFVV* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:9132053}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00155366001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013635243.1 | 1e-130 | PREDICTED: zinc finger protein ZAT11-like | ||||
Refseq | XP_022557798.1 | 1e-129 | zinc finger protein ZAT9-like | ||||
Swissprot | Q9SLD4 | 5e-98 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | A0A3P6D439 | 1e-130 | A0A3P6D439_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g186920.1 | 1e-129 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM531 | 28 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 1e-100 | C2H2 family protein |
Publications ? help Back to Top | |||
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