![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00155334001 | ||||||||
Common Name | GSBRNA2T00155334001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 201aa MW: 22606.3 Da PI: 6.5238 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00025 | 37 | 59 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C + F++ L H+++H GSBRNA2T00155334001 37 YACSFCRREFRSAQALGGHMNVH 59 89*******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.35E-6 | 34 | 63 | No hit | No description |
Pfam | PF13912 | 1.3E-5 | 37 | 60 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.177 | 37 | 64 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 39 | 59 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 201 aa Download sequence Send to blast |
MDKPGGLFIP KKKQSSWEEL AFAEDDAAGS LWPPRSYACS FCRREFRSAQ ALGGHMNVHR 60 RDRARLKQSD DQYLFSNCDL YETPVIEGSK KRKIERDVPK NGDTENVNLG DTTDLSPRMN 120 LVIHEGYPIT AQVSDEEVGR GDSLKKRRMR ESSSEPSIFV SSFSCKSAII TRNEEIKPKG 180 GHFEDLDLEL RLGADPPKEN * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 3e-14 | 32 | 59 | 2 | 29 | superman protein |
2l1o_A | 3e-14 | 32 | 59 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bna.26835 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, axillary buds and flowers. {ECO:0000269|PubMed:12154136}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00155334001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189307 | 1e-158 | AC189307.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB033O04, complete sequence. | |||
GenBank | AC189510 | 1e-158 | AC189510.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB089D07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013699590.1 | 1e-82 | zinc finger protein 10-like | ||||
Swissprot | O80942 | 8e-46 | ZFP10_ARATH; Zinc finger protein 10 | ||||
TrEMBL | A0A3N6TAM1 | 8e-80 | A0A3N6TAM1_BRACR; Uncharacterized protein | ||||
STRING | Bo4g187170.1 | 2e-80 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11047 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G37740.1 | 6e-46 | zinc-finger protein 10 |
Publications ? help Back to Top | |||
---|---|---|---|
|