PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00155153001

Common Name

GSBRNA2T00155153001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 419aa MW: 47087.9 Da PI: 6.9657

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00155153001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.7	9.6e-32	88	141	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +F++ave+LGG+++AtPk +l+lm+vkgL+++hvkSHLQ+YR+ GSBRNA2T00155153001 88 PRLRWTPELHLCFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHLQMYRS 141 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-30	84	142	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.321	84	144	IPR017930	Myb domain
SuperFamily	SSF46689	3.94E-16	85	143	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.8E-24	88	143	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-9	89	140	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MTPSSQSSEN SKTCPSNNFK ATTTKEDDDK DEEEEEEEEE DEEERSADQS PSSNSYVEES 60 RSQHHHNNND QIKKKGGSVR PYNRSKTPRL RWTPELHLCF LQAVERLGGP DRATPKLVLQ 120 LMNVKGLSIA HVKSHLQMYR SKKTDDLNQG NLLLLGDQGF SFEHGAGYTY NLSQLPMLQS 180 FDQGPSTSLG YGGGLWIDHR RQVYRSPWRG LTARDNTRTR QTLFSSQLGE RFLGVSNSIL 240 DDKNKTISFR TNSREAAHAS NGIGEAVPRS HSSFLEGMKT FNKSWGQSFP SNPNPSMPSK 300 PQDHTAVTLN FHQSDNPRVG EETENDLKRK RLLLSGDYNK SNQDLDLCLS LKVPPTHNNL 360 GECLLEEGEK EHEDSKRLSL SLSSSSLSQH GRAIRKEDQN DHKKRKISVL ASPLDLTL*

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MTPSSQSSEN SKTCPSNNFK ATTTKEDDDK DEEEEEEEEE DEEERSADQS PSSNSYVEES  60
RSQHHHNNND QIKKKGGSVR PYNRSKTPRL RWTPELHLCF LQAVERLGGP DRATPKLVLQ  120
LMNVKGLSIA HVKSHLQMYR SKKTDDLNQG NLLLLGDQGF SFEHGAGYTY NLSQLPMLQS  180
FDQGPSTSLG YGGGLWIDHR RQVYRSPWRG LTARDNTRTR QTLFSSQLGE RFLGVSNSIL  240
DDKNKTISFR TNSREAAHAS NGIGEAVPRS HSSFLEGMKT FNKSWGQSFP SNPNPSMPSK  300
PQDHTAVTLN FHQSDNPRVG EETENDLKRK RLLLSGDYNK SNQDLDLCLS LKVPPTHNNL  360
GECLLEEGEK EHEDSKRLSL SLSSSSLSQH GRAIRKEDQN DHKKRKISVL ASPLDLTL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-17	89	143	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	89	143	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	89	143	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	89	143	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00155153001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232572	0.0	AC232572.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS005G02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013633933.1	0.0	PREDICTED: uncharacterized protein LOC106339633 isoform X2
Refseq	XP_013693003.1	0.0	two-component response regulator ARR1-like isoform X2
TrEMBL	A0A3P6D8N3	0.0	A0A3P6D8N3_BRAOL; Uncharacterized protein
STRING	Bo4g188940.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9359	21	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	1e-173	G2-like family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]