PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00154518001
Common NameGSBRNA2T00154518001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 219aa    MW: 24013.1 Da    PI: 6.6775
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00154518001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92.1e-094392253
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS
                  HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53
                         +  h  +Er+RR+++ + f+ Lr++lP       ++K   +e +  Av++Ik+
  GSBRNA2T00154518001 43 KLLHRDIERQRRQEMATLFASLRDHLPLqY---IKGKRAVSEHVGGAVNFIKD 92
                         6679************************66...999999999**999999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.28E-1238111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.47E-83992No hitNo description
PROSITE profilePS5088811.6814193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-743110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-74392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MDPYQNSNPR GNQEHMPFGS AGDGGSGGSD IPQGTVDNKQ KKKLLHRDIE RQRRQEMATL  60
FASLRDHLPL QYIKGKRAVS EHVGGAVNFI KDTETRIKEL SARRDELIRE TCYTSNPDLA  120
RTASELGNSV PASVMVQPCV SGFEVAVSSD SSGPQALPLS RVLEALQELG LEVISSLTTR  180
VNERLIHTIR VEVNSFGCLN LAWLQQKLVE ELIPSTGY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00154518001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597230.11e-162PREDICTED: transcription factor bHLH126-like isoform X2
RefseqXP_022561518.11e-162transcription factor bHLH126-like
SwissprotQ9STJ61e-101BH126_ARATH; Transcription factor bHLH126
TrEMBLA0A0D3DG301e-160A0A0D3DG30_BRAOL; Uncharacterized protein
STRINGBo7g110290.11e-161(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29682767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.11e-103bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]