PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00154427001
Common NameGSBRNA2T00154427001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 349aa    MW: 38207.4 Da    PI: 10.4754
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00154427001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.9e-31279337259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d  ++++tYeg+Hnh 
  GSBRNA2T00154427001 279 SDEFSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERAPDDAMMLIVTYEGDHNHA 337
                          69************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.5E-15242276IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.808.4E-33266338IPR003657WRKY domain
PROSITE profilePS5081129.895273339IPR003657WRKY domain
SuperFamilySSF1182909.42E-26276337IPR003657WRKY domain
SMARTSM007741.2E-37278338IPR003657WRKY domain
PfamPF031061.7E-26280336IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MTVELMMSSS SYGGGKVKRE EDGGFPAEKG DTALKEAASA GIHGVEEFLK LIGQRQPTEE  60
KQTEITAVTD VAVNSFKKVI SLLGRSRTGH ARFRRGPVTT TKPEEVVVKT EEKPRTTTTT  120
TTTVVLNREK TEKHGGSAFR VYCPTPIHRR PPLSHAHAHT KNGSSSPAPL LPNGKPHQEP  180
PPSTIHFAPS PPVSAANSFM SSHRCETESN QMSSGFEFTN PSSQFSGWRG KPPLSSASLK  240
RKCSSTPSGR CHCTKKRKSK VKRVIRVPAV SSKMADIPSD EFSWRKYGQK PIKGSPHPRG  300
YYKCSSMRGC PARKHVERAP DDAMMLIVTY EGDHNHAMVL QTPHEKTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-22266338273WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239257KRKCSSTPSGRCHCTKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.28610.0flower| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00154427001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3841120.0FJ384112.1 Brassica napus cultivar Westar WRKY transcription factor 7 (WRKY7) mRNA, WRKY7-2 allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001302938.10.0probable WRKY transcription factor 7
SwissprotQ9STX01e-175WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLC5H9Z70.0C5H9Z7_BRANA; WRKY transcription factor 7
STRINGBo7g109430.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-159WRKY DNA-binding protein 7
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]