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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00154017001 | ||||||||
Common Name | GSBRNA2T00154017001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 347aa MW: 39595 Da PI: 9.6403 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.9 | 8e-18 | 5 | 95 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 ff +l+ s++ +++rl++p kf+++++ + s+ + l+ ++g +W+v l rk+++ +++++GW+eFv+ ++ g ++F+++g+s f+ GSBRNA2T00154017001 5 FFHKLIFSSTIQEKRLRVPDKFVSKFKDE--LSVAVALTVPDGHVWRVGL--RKSDNNkIYFQDGWQEFVDRYSIRIGYLLIFRYEGNSAFS 92 899999*****************999755..99*****************..7777777****************************99995 PP .EE CS B3 92 lvv 94 ++ GSBRNA2T00154017001 93 VYI 95 544 PP | |||||||
2 | B3 | 53.5 | 4.4e-17 | 250 | 342 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f vl ps+ + ++++lp fae++ +g++ + +++ ++ ++W v++ k gr +++GW eF +n+L egD++vF+l ++++ GSBRNA2T00154017001 250 FRVVLRPSYLYRGCIMYLPSGFAEKYlSGIS-GFIKV---QLGEKQWPVRC--LYKAGRAKFSQGWYEFTLENNLGEGDVCVFELLRTRD 333 677899********************84442.43344...4677*******..666666779***********************999** PP E..EEEEE- CS B3 90 felvvkvfr 98 f l+v+++r GSBRNA2T00154017001 334 FVLKVTAYR 342 *99998877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.88E-21 | 3 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-22 | 3 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.52E-20 | 5 | 97 | No hit | No description |
PROSITE profile | PS50863 | 14.903 | 5 | 99 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.7E-15 | 5 | 95 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-17 | 5 | 99 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-22 | 242 | 342 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-22 | 243 | 343 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.28E-20 | 248 | 342 | No hit | No description |
PROSITE profile | PS50863 | 12.52 | 250 | 344 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-15 | 250 | 342 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.8E-21 | 250 | 344 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKSDNNKI 60 YFQDGWQEFV DRYSIRIGYL LIFRYEGNSA FSVYIYNLSH SEINYHSSAL MDTAHTHLKR 120 ARLFEDLEDE DAAEVVYPSS SVYPSSQQHP EVTVAAIKGY ASPAIQSFFA GPPVKAEEAT 180 PTPKVTKKRG RKKKNAVPEE VNSSAPRDDD PESRSKFYES ASARKRTVTA EERERAINAA 240 KTFEPTNPFF RVVLRPSYLY RGCIMYLPSG FAEKYLSGIS GFIKVQLGEK QWPVRCLYKA 300 GRAKFSQGWY EFTLENNLGE GDVCVFELLR TRDFVLKVTA YRVNSI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 8e-92 | 213 | 344 | 12 | 143 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 8e-92 | 213 | 344 | 12 | 143 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.6174 | 0.0 | flower| leaf| microspore-derived embryo| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and at lower levels in aerial parts. {ECO:0000269|PubMed:12114624}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00154017001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009145836.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1 | ||||
Swissprot | Q8L3W1 | 0.0 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A397ZIW8 | 0.0 | A0A397ZIW8_BRACM; Uncharacterized protein | ||||
STRING | Bo5g116790.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1124 | 28 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 0.0 | B3 family protein |
Publications ? help Back to Top | |||
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