PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00154015001
Common NameGSBRNA2T00154015001, LOC106451913
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 213aa    MW: 24239.2 Da    PI: 5.9105
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00154015001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.85.5e-1536119897
                          -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                          ++++k++++++p kf++  +g+ + s  +t+e++ g + ++kl  ++ +++++l +GW+eF++a+ + eg f+ F ++g+s+f   v++f
  GSBRNA2T00154015001  36 PSTMKRNMMMIPPKFVN-LQGS-TLSEFVTVETPVGFRRSIKL--KRIGEEIWLHGGWSEFAEAHSISEGHFLFFDYKGNSTF--SVMIF 119
                          67788899********4.4444.48889***************..**********************************9999..77776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-2123124IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-1924124IPR015300DNA-binding pseudobarrel domain
CDDcd100171.67E-1128119No hitNo description
PROSITE profilePS5086311.88529122IPR003340B3 DNA binding domain
SMARTSM010194.0E-1330122IPR003340B3 DNA binding domain
PfamPF023621.3E-1236119IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MVTTRQKKAG VTTASHRRPP SEPDSSVKKF WNVVLPSTMK RNMMMIPPKF VNLQGSTLSE  60
FVTVETPVGF RRSIKLKRIG EEIWLHGGWS EFAEAHSISE GHFLFFDYKG NSTFSVMIFH  120
VSACEIDYPL DEVHISDSDS DDDVMDVTDE GFRGTQATRR NDQSVNGGGI EHNRKKRARD  180
DEFDKILNDL DGMKLLEEEE DGKRVFRGQQ FF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.175970.0seed| vegetative meristem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00154015001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325620.0AC232562.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH054E04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013749351.11e-157B3 domain-containing protein At3g18960
SwissprotQ84R275e-91Y3896_ARATH; B3 domain-containing protein At3g18960
TrEMBLM4E0S71e-143M4E0S7_BRARP; Uncharacterized protein
STRINGBra022374.1-P1e-144(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.14e-89B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]