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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSBRNA2T00153974001 |
Common Name | GSBRNA2T00153974001, LOC106412890 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
M-type_MADS |
Protein Properties |
Length: 371aa MW: 42367.4 Da PI: 9.2871 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSBRNA2T00153974001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 68.9 | 4.6e-22 | 25 | 71 | 5 | 51 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
+s + ++++kR+ +++KKA ELS+LC++ev+vi+++s+g+l+++++
GSBRNA2T00153974001 25 TSSLKATSLAKRQVTVFKKARELSILCGIEVCVIYYGSEGELKTWPK 71
578899***************************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 371 aa
Download sequence Send
to blast |
MSSSSLACLP SSSSSQIRQN HFQKTSSLKA TSLAKRQVTV FKKARELSIL CGIEVCVIYY 60 GSEGELKTWP KDREKVKDMA RRYSQLSDMK RRKGQDDLDK FLKKINKEDS KKKKKMKKVK 120 VESSCKYPDW DPRFDNCSVE QLTELIQSLE HSETKLQHRL RGAVESQRQR NMYYTTMTGQ 180 EQMNHLQQHS NQVSMDQYNH GTGTLPQLPV STSGFNQSQS LAPLPNSLTI HQNPNMESYS 240 RLLGVQETGI NEFLSMNMLP YNNNNINTNN VNVFPNQFHQ NSYNMEDYSG FLGVQETGIN 300 NMSSEDYSGL LWTQGTGING LQNMDMFGYN NNSNNNAYGF SHHQPVQYPG QRAPLGFQYM 360 DRSTQNIRPL *
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 90 | 116 | RRKGQDDLDKFLKKINKEDSKKKKKMK |
2 | 101 | 117 | LKKINKEDSKKKKKMKK |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |