PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00153903001
Common NameGSBRNA2T00153903001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 744aa    MW: 84841.3 Da    PI: 7.8839
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00153903001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.4e-09356400246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          ++WT+eE+  l   +++ G  +W  Ia  +g++Rt+ qc  r+q 
  GSBRNA2T00153903001 356 DPWTAEEENNLRVIIQEKGFTDWLDIAVSLGTNRTPFQCLARYQR 400
                          69*****************************************96 PP
2Myb_DNA-binding461.2e-14408454148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          r+ WT+eEd++l  av+++G ++W t+a+ +  gR + qc +rw k l
  GSBRNA2T00153903001 408 RKEWTAEEDDQLRAAVELYGEKDWQTVANALE-GRAGTQCSNRWKKTL 454
                          789*****************************.***********9975 PP
3Myb_DNA-binding47.34.9e-15462506247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          g+++ +E+++l+ av+++G  +W++Iar ++ gRt  qc+++w + 
  GSBRNA2T00153903001 462 GKFSSDEEKRLKVAVTLFGAQNWHKIARFVP-GRTSTQCREKWANC 506
                          79*****************************.***********885 PP
4Myb_DNA-binding53.74.7e-17514558247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          g+W++eEd +l +a +++  g+W++Ia++++ +Rt++qc+ rw ++
  GSBRNA2T00153903001 514 GKWSKEEDAKLREAMAEHEIGNWSKIASHVP-RRTDNQCRRRWMQL 558
                          89*****************************.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.133253349IPR017877Myb-like domain
SMARTSM007170.1257351IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-8260276IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-8322361IPR009057Homeodomain-like
SuperFamilySSF466896.36E-14331399IPR009057Homeodomain-like
PROSITE profilePS512948.962350402IPR017930Myb domain
SMARTSM007174.6E-8354404IPR001005SANT/Myb domain
PfamPF002494.3E-8356400IPR001005SANT/Myb domain
CDDcd001675.53E-6357402No hitNo description
Gene3DG3DSA:1.10.10.607.4E-13362410IPR009057Homeodomain-like
SuperFamilySSF466892.73E-19387458IPR009057Homeodomain-like
PROSITE profilePS5129421.822403458IPR017930Myb domain
SMARTSM007176.1E-14407456IPR001005SANT/Myb domain
PfamPF002491.4E-12408453IPR001005SANT/Myb domain
CDDcd001674.17E-11410454No hitNo description
Gene3DG3DSA:1.10.10.601.4E-16411457IPR009057Homeodomain-like
PROSITE profilePS5129412.027459507IPR017930Myb domain
SMARTSM007171.7E-11460509IPR001005SANT/Myb domain
PfamPF002499.1E-13462506IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-17462511IPR009057Homeodomain-like
CDDcd001676.69E-10463505No hitNo description
SuperFamilySSF466894.31E-26487562IPR009057Homeodomain-like
PROSITE profilePS5129425.519508563IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-21512558IPR009057Homeodomain-like
SMARTSM007174.5E-15512561IPR001005SANT/Myb domain
PfamPF002494.1E-16514558IPR001005SANT/Myb domain
CDDcd001672.44E-14515558No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 744 aa     Download sequence    Send to blast
MLRSLKSQLA SSTGPPVGFP LPSDSESDDD FELLRSLKSQ LALSMNARLP PMSLSDDDDE  60
DDDSFETLRA IRRRFSAYAN LDQDGAFMND SLGKKKQVHA SDNEPSREIL NQGKQAGDSV  120
DLHENSAIAT LDPTCQSSSF PEAAQAFVEA IRRNRAYQKF LRKKLTEIEA KIEQNEKHQK  180
NVKIVVDFQA SCKRITKQAL SQGKDPRLQL ISTPKCGPRD SSEDNDKKIS PLTFGPSENS  240
CVENYRMAIK NYPVSVNRRS WSTEENENLA KGLKQQLQET LLNEAIERYS DLEGSSDDIE  300
TINESIKNLE ITPEMMRQFL PKVNWDQLAS MYVKDRSAAE CEARWMSSED PLINHDPWTA  360
EEENNLRVII QEKGFTDWLD IAVSLGTNRT PFQCLARYQR SLNADILRKE WTAEEDDQLR  420
AAVELYGEKD WQTVANALEG RAGTQCSNRW KKTLHPTRTR VGKFSSDEEK RLKVAVTLFG  480
AQNWHKIARF VPGRTSTQCR EKWANCLDPN VNHGKWSKEE DAKLREAMAE HEIGNWSKIA  540
SHVPRRTDNQ CRRRWMQLYP HQVPLLQEAT RLRKEAIVGN FVDRESQRPA LLECKFLALP  600
EIPLEPEPEI VAVKKKRKAR PKKADAECES EVSSAAKERR PKRRRKGLER CSGDVCRQEN  660
ETVCENIENL DNGGEVRSLE WYKENQDNVK EKKQRRRRKS VAETSNNSTV TTDCSQVKVG  720
VKKLTPRRKV SAVVPVENQD APN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-273245553155MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-273245553155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00153903001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013685979.10.0snRNA-activating protein complex subunit 4-like isoform X1
TrEMBLA0A3P5ZJI70.0A0A3P5ZJI7_BRACM; Uncharacterized protein
STRINGBra022280.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65042744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]