PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00153852001
Common NameGSBRNA2T00153852001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 227aa    MW: 26106.1 Da    PI: 5.1657
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00153852001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.32e-5561331128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhPtdeelv++yLk+k++g+++el ++i+evd+yk+ePwdL  k  + +++ ewyfF +rd+ky++g r+nrat+ gyWk+tgk
  GSBRNA2T00153852001   6 LPPGFRFHPTDEELVNYYLKRKISGQEIEL-DIIPEVDLYKCEPWDLAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRGGYWKSTGK 94 
                          79****************************.99**************84335556888******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++v+s +++++g+kktLv+y+grap+g +tdWvmheyrl
  GSBRNA2T00153852001  95 DRRVTS-QSRAIGMKKTLVYYRGRAPQGIRTDWVMHEYRL 133
                          ******.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-654157IPR003441NAC domain
PROSITE profilePS5100560.8636156IPR003441NAC domain
PfamPF023652.2E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MAPVGLPPGF RFHPTDEELV NYYLKRKISG QEIELDIIPE VDLYKCEPWD LAEKSFLPSR  60
DPEWYFFGPR DRKYPNGFRT NRATRGGYWK STGKDRRVTS QSRAIGMKKT LVYYRGRAPQ  120
GIRTDWVMHE YRLDDKDCDD PSSLQDSYAL CRVFKKNGIC SELETEPQLQ TGQCSFTTVS  180
MEMNSNNINY NNIVDDKDDS WMQFITDDAW DSSSNAAAMG HGQGVY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-57215711169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269|PubMed:25081480}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00363DAPTransfer from AT3G17730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00153852001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382710.0KF738271.1 Brassica napus NAC transcription factor 57 (NAC57.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145987.11e-166PREDICTED: NAC domain-containing protein 86
RefseqXP_013749472.11e-166NAC domain-containing protein 86-like isoform X2
SwissprotQ9FFI51e-89NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A397ZCN61e-165A0A397ZCN6_BRACM; Uncharacterized protein
TrEMBLM4E0D91e-165M4E0D9_BRARP; Uncharacterized protein
STRINGBra022236.1-P1e-166(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85042839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-145NAC domain containing protein 57
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]