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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00153797001 | ||||||||
Common Name | GSBRNA2T00153797001, LOC106452078 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | CAMTA | ||||||||
Protein Properties | Length: 854aa MW: 97096.7 Da PI: 7.1025 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 160.3 | 3.7e-50 | 30 | 147 | 2 | 118 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 l+e ++rwl+++ei+a+L n + +++ ++ + p+sg++iL++rk++r+frkDG++wkkkkdg+tv+E+he+LKvg e +++yYah+e+ GSBRNA2T00153797001 30 LEEaRSRWLRPNEIHAVLSNPKYFTINVKPVNLPTSGRIILFDRKMLRNFRKDGHNWKKKKDGRTVKEAHEHLKVGDEERIHVYYAHGED 119 55669************************************************************************************* PP CG-1 91 nptfqrrcywlLeeelekivlvhylevk 118 n+tf rrcywlL++++e+ivlvhy++++ GSBRNA2T00153797001 120 NTTFVRRCYWLLDKARENIVLVHYRDTQ 147 *************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 74.162 | 26 | 152 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 2.0E-78 | 29 | 147 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 6.8E-44 | 32 | 145 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 3.0E-4 | 313 | 399 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 1.54E-14 | 314 | 400 | IPR014756 | Immunoglobulin E-set |
Pfam | PF12796 | 3.4E-7 | 502 | 580 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 9.57E-16 | 508 | 610 | No hit | No description |
SuperFamily | SSF48403 | 4.82E-17 | 509 | 614 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.3E-17 | 509 | 613 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.963 | 518 | 613 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 11.728 | 551 | 583 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 3.4E-6 | 551 | 580 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50096 | 7.144 | 700 | 724 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.21 | 700 | 716 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 85 | 715 | 737 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.024 | 738 | 760 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 10.255 | 739 | 763 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.014 | 740 | 760 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 13 | 812 | 834 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.224 | 813 | 842 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 854 aa Download sequence Send to blast |
MDGDGSSGRL IGSEIHGFHT LQDLDVQTML EEARSRWLRP NEIHAVLSNP KYFTINVKPV 60 NLPTSGRIIL FDRKMLRNFR KDGHNWKKKK DGRTVKEAHE HLKVGDEERI HVYYAHGEDN 120 TTFVRRCYWL LDKARENIVL VHYRDTQEAA TTSGDSNSPS AHSSSNLVAV EDIEFNRDES 180 LYLGINNTPV VKTHETRLHD INTLDWDELL VQSDLDNQSA PIVDDMSYFT EHLQNATKDT 240 AEHLTVADES LDALLNNGPQ SRENFGRWMN SFIGDPNGSL EDPSFEAMVT LDQNPLAPQA 300 TFHPHSDLPQ QVFNITEVSP AWAYSSEKTK IVVTGILHNS YQHLGSSNLF CICGDSCVPA 360 EYVQAGVYRC FIPPHSPGMA NLYLSADGHE PISQCFTFEH RPAPVSAKTV LENDQESKWE 420 EFELQVRLAH LLFTSSNKLN VLSSNISPEN FLDAKKLSNK TSHLLNSWAY LIKSVQGSKV 480 SFDQAKDQIF ELTLKNRIKE WLMEKVLEGR NARDYDSKGL GVIHLCAILG YTWSIQLFSL 540 SGLSLDFRDK QGWTALHWAA YYGREKMVAA LLTAGAKPNL VTDSRKDNLG GCTPADLAQQ 600 NGFDGIAAYL AEKCLVAQFV AMKLAGNISG TLETCKGEMS NQGPLPDDEQ NLKDALAAYR 660 TAAEAAARIQ GAFREKALKT ARSKVIQFDN KEEEAKSIIA AMKIQNAFRK YDTRRKIEAA 720 YRIQCRFQTW KMRREFLNMR RQAIRIQAAF RGLQARKQYR KILWSVGVLE KAIIRWRQKR 780 KLFIGLQVSE AEAEEKAEED FYKASQKQAE ERLERSVVRV QAMFRSKKAQ EDYRRMKLTH 840 EETQLEYEFL HDV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.23340 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, sepals, petals, stamen filaments, top of carpels, anthers and siliques, but not in stigmas. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:12218065, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00153797001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013749550.1 | 0.0 | calmodulin-binding transcription activator 6 | ||||
Swissprot | Q9LSP8 | 0.0 | CMTA6_ARATH; Calmodulin-binding transcription activator 6 | ||||
TrEMBL | A0A397ZGR5 | 0.0 | A0A397ZGR5_BRACM; Uncharacterized protein | ||||
STRING | Bra022188.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4021 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16940.1 | 0.0 | calmodulin binding;transcription regulators |
Link Out ? help Back to Top | |
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Entrez Gene | 106452078 |
Publications ? help Back to Top | |||
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