PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00153792001
Common NameGSBRNA2T00153792001, LOC106452076
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 167aa    MW: 17755.2 Da    PI: 9.1452
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00153792001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.38.8e-184175135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C+ Cgt  TplWR gp g+k+LCnaCG++ rkk++
  GSBRNA2T00153792001 41 CVDCGTFRTPLWRGGPAGPKSLCNACGIKSRKKRQ 75
                         *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.2813571IPR000679Zinc finger, GATA-type
SMARTSM004017.5E-133591IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.09E-123577No hitNo description
Gene3DG3DSA:3.30.50.101.8E-143975IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.35E-114088No hitNo description
PfamPF003201.3E-154175IPR000679Zinc finger, GATA-type
PROSITE patternPS0034404166IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MSDGSEETKT KLDSSGESSD VDNENCISSG GGSSGEAKRT CVDCGTFRTP LWRGGPAGPK  60
SLCNACGIKS RKKRQAALGI KPEKKIRKSI IITSDTSDLS LEDDDHKTCS SSSSKGISRF  120
LDLGFKVPVM KRSSVEKKKR LWSKLGEEER AAAVLLMALS CASVYA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.155391e-176seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00153792001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013749549.11e-116GATA transcription factor 17
SwissprotQ9LIB56e-66GAT17_ARATH; GATA transcription factor 17
TrEMBLM4E0871e-114M4E087_BRARP; Uncharacterized protein
STRINGBra022184.1-P1e-114(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126431528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16870.17e-65GATA transcription factor 17
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]