PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00153534001

Common Name

GSBRNA2T00153534001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 545aa MW: 61938.4 Da PI: 8.2013

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00153534001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16	2.3e-05	359	392	17	55
HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 N++f+ Lr ++P+ + ++K eiL +++Y+++L+ GSBRNA2T00153534001 359 NEKFSVLRAMVPTvN------EVDKEEILNNTIKYLQELE 392 9**********55......8*************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	2.4E-51	20	211	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	9.724	342	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-6	352	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-8	357	406	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-8	359	402	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence Send to blast
MDDDGVEAPR GRSRRRNSLL SKQLAVAVKS VQWSYAIFWS SSPTQSGVLE WGEGCYNGEM 60 KKRKKRYEVH YKHVLQRSNQ LRKLYLCMRE GDSTNTISTT HDDGYHNCNN TTSMLLSPDD 120 LSDEEWYYVV SMSYVFSPSQ CLPGRALATG ETIWLCNAQY ADSKLFSRSL LARSASIQTV 180 VCFPYLGGVI ELGVTELISE DPSLLQHIKS CLLETSKPDC PSNNFSAHQY NADDDKKNQM 240 KIKIKNPQIQ FGISDLMLDE DLHYKRTVST LLKYAADKSK MKNSHHRQPE LVSSNSGSSF 300 LRWKQPSSNL LLKHSNSQNV LRKILHDVPL MHSVDTKRLS TNKMFGLNQD DPSVKRKENE 360 KFSVLRAMVP TVNEVDKEEI LNNTIKYLQE LEERVEELES CMGSVNFVGK QRKTKKSLND 420 SVLIEETSGN YDDSTKIDGN SGETEQAVTV LRDETHFRVK LKETEVVMEV RCSYRDYIVA 480 DIMETLSKLH MDAFSVRSHT LNGFLTLNLK AKLREAAVAS VGMIKRELRR VIVNGFTCIT 540 PVFF*

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence Send to blast

MDDDGVEAPR GRSRRRNSLL SKQLAVAVKS VQWSYAIFWS SSPTQSGVLE WGEGCYNGEM  60
KKRKKRYEVH YKHVLQRSNQ LRKLYLCMRE GDSTNTISTT HDDGYHNCNN TTSMLLSPDD  120
LSDEEWYYVV SMSYVFSPSQ CLPGRALATG ETIWLCNAQY ADSKLFSRSL LARSASIQTV  180
VCFPYLGGVI ELGVTELISE DPSLLQHIKS CLLETSKPDC PSNNFSAHQY NADDDKKNQM  240
KIKIKNPQIQ FGISDLMLDE DLHYKRTVST LLKYAADKSK MKNSHHRQPE LVSSNSGSSF  300
LRWKQPSSNL LLKHSNSQNV LRKILHDVPL MHSVDTKRLS TNKMFGLNQD DPSVKRKENE  360
KFSVLRAMVP TVNEVDKEEI LNNTIKYLQE LEERVEELES CMGSVNFVGK QRKTKKSLND  420
SVLIEETSGN YDDSTKIDGN SGETEQAVTV LRDETHFRVK LKETEVVMEV RCSYRDYIVA  480
DIMETLSKLH MDAFSVRSHT LNGFLTLNLK AKLREAAVAS VGMIKRELRR VIVNGFTCIT  540
PVFF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	3e-12	20	212	9	192	Transcription factor MYC3
4rqw_B	3e-12	20	212	9	192	Transcription factor MYC3
4rs9_A	3e-12	20	212	9	192	Transcription factor MYC3
4yz6_A	3e-12	20	212	9	192	Transcription factor MYC3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	60	64	KKRKK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in developing seeds. Also detected in stems and leaves. {ECO:0000269\|PubMed:12679534, ECO:0000269\|PubMed:8980509}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269\|PubMed:15361138}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00153534001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493664	0.0	AB493664.1 Arabidopsis thaliana At4g00480 mRNA for hypothetical protein, partial cds, clone: RAAt4g00480.
GenBank	AF251697	0.0	AF251697.1 Arabidopsis thaliana putative transcription factor BHLH12 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013628089.1	0.0	PREDICTED: transcription factor MYC1-like
Swissprot	Q8W2F1	0.0	BH012_ARATH; Transcription factor MYC1
TrEMBL	A0A3P6AI14	0.0	A0A3P6AI14_BRAOL; Uncharacterized protein
STRING	Bo3g054730.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11770	18	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00480.1	0.0	bHLH family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]