PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00153148001

Common Name

GSBRNA2T00153148001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 287aa MW: 32727.1 Da PI: 6.412

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00153148001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.1	2.1e-15	97	148	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i+ A++Y+k+L+ GSBRNA2T00153148001 97 QRMTHIAVERNRRKQMNEYLAVLRSLMPSS---YAQRGDQASIVGGAINYVKKLE 148 79**************************...*****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.8E-14	95	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.53E-13	95	152	No hit	No description
SuperFamily	SSF47459	4.97E-17	96	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.12	96	147	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-12	97	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-10	102	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MPLESVVYPQ DSLGYPSTCK YFMFHDLYYQ EEVVSFVEND KEEDRQWRDY HQYPLLPSLE 60 EELGLPAIDM ESPPPLQQRR KRRRTRSNKN VEEIENQRMT HIAVERNRRK QMNEYLAVLR 120 SLMPSSYAQR GDQASIVGGA INYVKKLEHI LQSMEPNRTT TIPHEANTST SSLVDPFSDF 180 FSFPQYSTKS SSITEGSSSP AEIEVTVAEG HANIKIMAKK KPKQLLKLVA SIQSLRLALL 240 HLNVTTLDNS ILYSISVKVE EGSQLTTVDD IATALNKIMR RIQEES*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	83	QRRKRRR
2	79	83	RKRRR
3	79	84	RKRRRT
4	97	108	RMTHIAVERNRR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00153148001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013722066.1	0.0	transcription factor bHLH94-like
Swissprot	Q9SK91	1e-150	BH094_ARATH; Transcription factor bHLH94
TrEMBL	A0A3P6FFG9	0.0	A0A3P6FFG9_BRAOL; Uncharacterized protein
STRING	Bo8g071490.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1116	27	102

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22490.1	1e-139	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]