PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00153033001 | ||||||||
Common Name | GSBRNA2T00153033001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Trihelix | ||||||||
Protein Properties | Length: 959aa MW: 106890 Da PI: 7.0622 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 27.4 | 8.5e-09 | 147 | 230 | 2 | 73 |
trihelix 2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 W+ +e l+L +a r ++ r+g+ ++ + +ev++++ ++g++r +k kw+n+ ++++k++e+ek+ GSBRNA2T00153033001 147 WKPNEMLCLARAWRVQYQNQRTGSgsgsgsgegrgkTRAEKDREVAEYLNRKGVNRDSKVAGTKWDNMLGEFRKVNEWEKGADR 230 77777888877777555555544333444444444499999***************************************8633 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.4E-7 | 145 | 230 | No hit | No description |
CDD | cd00180 | 1.43E-9 | 806 | 947 | No hit | No description |
SuperFamily | SSF56112 | 1.34E-13 | 806 | 947 | IPR011009 | Protein kinase-like domain |
Gene3D | G3DSA:1.10.510.10 | 1.2E-5 | 806 | 946 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 959 aa Download sequence Send to blast |
MGETTKGDAT KPSPNQISPP KDSSLDHQTL NPSLLHHQHQ SFLSSPIFIP TVSSPGAPVI 60 PKRPRFSSSG GLSPPQWRAL PSPSTVPTAS TISSLPSPST AVIAASSTET AGSSPLVQEA 120 TNTEKQQPET ESFQHKFRKG KYVSPVWKPN EMLCLARAWR VQYQNQRTGS GSGSGSGEGR 180 GKTRAEKDRE VAEYLNRKGV NRDSKVAGTK WDNMLGEFRK VNEWEKGADR ERYGKSYFRL 240 SPYERKQHQL PASFDEEVYN ELALFIGPRV RAPTISRSVS GGATADVTLT PPSAETLPPP 300 LHPPVMTSRD DDINNNPITS IGRGKRLALS TVGDDHPQYP YSSNIARGSG LFSNRSLYYN 360 PSCERIPSSS SSSSLKDLRR VGKIRLTWEE SVNLWAEEGE VDYGRIRVCG SSFLNADELT 420 YLDDSMVAST MESFEDGPLK GFSLDKFISG QHLKVFGRQK STSSSAPPLS VNMAFDRAQL 480 PLSEHIHKSI STLEFQDPSE HCLSKLRVPA GNLPSITELA RYLQEPPPEN LRFPLRLDVY 540 NDLPLGKELF FSTSSTELLD CRAITYDILG HIMSPLNKGF VIFNKDSLIP LWEDCVNRMV 600 SKFCEMVVLR KPDSSSCVEN VQDQWPNVMG FVKGFGLWRG EEVDKVREGA PDPSSLLVEK 660 ILWSYNDLPY ILGYHAKGLT VTFCSLSRSS HDRVTCTDLY SFDVSSPSDR IKALVPCYRL 720 ASLLPLLADQ CTASRLCYND YERINHGDLL TEMTPHTVTK YYSSKRNWNV AKGIYDFLDQ 780 RVPHAEHLDR ASEKDLSLSV KPRGIRVKPL NVDQLIESLM CVTRALVALH DLSFMHRNMG 840 WENVMKSETT TTSNAEWFVC GFEEAAESPQ LNPHRLAAQE EEEERGRHAP EMERGLHAVK 900 VDVWGVGYMI KTCGVSNVPK MLRELQGKCL EPNQENRPTA ADCFHHLLQV QPAVPSSY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00153033001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013619892.1 | 0.0 | PREDICTED: uncharacterized protein LOC106326463 | ||||
TrEMBL | A0A3P6D2G1 | 0.0 | A0A3P6D2G1_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g048230.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8356 | 16 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 5e-09 | Trihelix family protein |
Publications ? help Back to Top | |||
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