PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00152759001 | ||||||||
Common Name | GSBRNA2T00152759001, LOC106409235 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Trihelix | ||||||||
Protein Properties | Length: 293aa MW: 34825 Da PI: 7.025 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 82 | 7.8e-26 | 39 | 121 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +e+++Li++r e+++++ ++k++k lWe+vs+kmr + f rsp+qCk+kw+nl +r+k +++++++ +++++p++d+++ GSBRNA2T00152759001 39 QWSVEETKELIAIRGELDQTFMETKRNKLLWEDVSNKMRNKSFLRSPEQCKCKWKNLVTRFKGCETMDEEI---AKQQFPFYDDMH 121 7********************************************************************97...45579*****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0012 | 36 | 98 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 5.64E-22 | 38 | 103 | No hit | No description |
Pfam | PF13837 | 1.0E-20 | 39 | 121 | No hit | No description |
PROSITE profile | PS50090 | 7.654 | 40 | 96 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MDQHQLHQLH YLNKHHHQLH PQSQTPELAS PATGDRFPQW SVEETKELIA IRGELDQTFM 60 ETKRNKLLWE DVSNKMRNKS FLRSPEQCKC KWKNLVTRFK GCETMDEEIA KQQFPFYDDM 120 HIIFASRMQR MIWAESEGGG GTSGATRKRS QSEQFSSDEE EENVNEELVD ISNEPKTQNP 180 KKNIAKKRKG GISNSSGGAN NSVREVLDEF MRHQMRMENE WRERWEAREK ERAEKEEEWR 240 RKMEELEKDR MAMERMWRDR EEQRRSREDL RAEKRDSLIN ALLAKLTRDG SL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ebi_A | 5e-13 | 36 | 117 | 3 | 84 | DNA binding protein GT-1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 179 | 188 | PKKNIAKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00152759001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013634279.1 | 0.0 | PREDICTED: trihelix transcription factor GT-3b-like | ||||
Refseq | XP_013705349.1 | 0.0 | trihelix transcription factor GT-3b | ||||
Swissprot | O80450 | 1e-119 | TGT3B_ARATH; Trihelix transcription factor GT-3b | ||||
TrEMBL | A0A0D3BQZ2 | 0.0 | A0A0D3BQZ2_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6BT13 | 0.0 | A0A3P6BT13_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g029680.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2215 | 28 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38250.1 | 3e-96 | Trihelix family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106409235 |
Publications ? help Back to Top | |||
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