PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00152636001
Common NameC.TTG2.a, GSBRNA2T00152636001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 403aa    MW: 44306.3 Da    PI: 9.8153
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00152636001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY955.3e-30155211360
                          -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          DgynWrKYGqK+vkgs+ pr+YY+Ct+++Cpvkk+vers   ++v ei+Y+geHnh+k
  GSBRNA2T00152636001 155 DGYNWRKYGQKQVKGSDSPRGYYKCTHPKCPVKKRVERSM-GGHVSEIVYQGEHNHSK 211
                          9***************************************.***************85 PP
2WRKY96.91.4e-30320377259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqK v g+ +prsYYrCts +C+++k+ver++ d +++++tYeg+Hnh+
  GSBRNA2T00152636001 320 EDGFKWRKYGQKAVGGNAYPRSYYRCTSVNCRARKRVERASGDSRAFITTYEGKHNHH 377
                          8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-26148212IPR003657WRKY domain
SuperFamilySSF1182902.75E-23153212IPR003657WRKY domain
SMARTSM007743.4E-30153211IPR003657WRKY domain
PfamPF031062.1E-23155209IPR003657WRKY domain
PROSITE profilePS5081122.779155212IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.8E-30309377IPR003657WRKY domain
PROSITE profilePS5081129.597314376IPR003657WRKY domain
SuperFamilySSF1182909.42E-26315377IPR003657WRKY domain
SMARTSM007745.3E-35319378IPR003657WRKY domain
PfamPF031062.4E-24320377IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MDVKERERKL IVKPVASRPS CSSVRTITEL MTDSVTVSPQ SNCHETVDAS IRPKTERFKQ  60
PASASVSSPR VEGSGNVKSC NDSESISYVI YKPKAKLVSQ ATVSALANMT WIKREAVAYG  120
KRVSQGTHRA GPNLIPRVPT FKESETSTGD RSYVDGYNWR KYGQKQVKGS DSPRGYYKCT  180
HPKCPVKKRV ERSMGGHVSE IVYQGEHNHS KPSCPLPRRA SSSSSSGFQT PSEGSMGEEP  240
NPLWSNQEKM NEGCVITPFE FAVPRTANSS GGTSDSGCRS SQCDERELDD PSRSKTSMKN  300
EKQSSEAGVS QSSGESDSLE DGFKWRKYGQ KAVGGNAYPR SYYRCTSVNC RARKRVERAS  360
GDSRAFITTY EGKHNHHHLL LRPTTSSTPL PFSSPQHSNQ AI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-24155376378Probable WRKY transcription factor 4
2lex_A1e-24155376378Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Leaf promordia, trichomes, atrichoblasts, fertilized eggs, seed coat.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00152636001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300560.0KF430056.1 Brassica rapa WRKY transcription factor 44 (WRKY44) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022557932.10.0WRKY transcription factor 44
RefseqXP_022557933.10.0WRKY transcription factor 44
SwissprotQ9ZUU00.0WRK44_ARATH; WRKY transcription factor 44
TrEMBLA0A078DVU40.0A0A078DVU4_BRANA; WRKY44
STRINGBo4g030720.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83622740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.10.0WRKY family protein
Publications ? help Back to Top
  1. Kim K,Jiang K,Teng SL,Feldman LJ,Huang H
    Using biologically interrelated experiments to identify pathway genes in Arabidopsis.
    Bioinformatics, 2012. 28(6): p. 815-22
    [PMID:22271267]
  2. Simon M, et al.
    Tissue-specific profiling reveals transcriptome alterations in Arabidopsis mutants lacking morphological phenotypes.
    Plant Cell, 2013. 25(9): p. 3175-85
    [PMID:24014549]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]
  5. Li Q, et al.
    Expression of Brassica napus TTG2, a regulator of trichome development, increases plant sensitivity to salt stress by suppressing the expression of auxin biosynthesis genes.
    J. Exp. Bot., 2015. 66(19): p. 5821-36
    [PMID:26071533]
  6. Verweij W, et al.
    Functionally Similar WRKY Proteins Regulate Vacuolar Acidification in Petunia and Hair Development in Arabidopsis.
    Plant Cell, 2016. 28(3): p. 786-803
    [PMID:26977085]
  7. Gonzalez A, et al.
    TTG2 controls the developmental regulation of seed coat tannins in Arabidopsis by regulating vacuolar transport steps in the proanthocyanidin pathway.
    Dev. Biol., 2016. 419(1): p. 54-63
    [PMID:27046632]
  8. Hassani-Pak K, et al.
    Developing integrated crop knowledge networks to advance candidate gene discovery.
    Appl Transl Genom, 2016. 11: p. 18-26
    [PMID:28018846]