PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00152426001 | ||||||||
Common Name | GSBRNA2T00152426001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 160aa MW: 17961.8 Da PI: 5.9086 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 33.2 | 1.6e-10 | 107 | 150 | 46 | 90 |
NAM 46 dLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 dL v ++++ew fF++ d+ky++g+r nrat +gyWk k+ GSBRNA2T00152426001 107 DLS-VVGTTDSEWLFFCPLDRKYPSGNRMNRATVAGYWKVAEKTV 150 554.5567789****************************887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 11.368 | 55 | 159 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.79E-9 | 113 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MALMLARSHE NDFAFQALET VDEALVTFCG VFDGWSFRSS CCLSDIYIAC EVAVFLSCLR 60 YIESSTMLIL YLSLDIPMMD KVALLVFAFF TELCRVSKDQ RKRASADLSV VGTTDSEWLF 120 FCPLDRKYPS GNRMNRATVA GYWKVAEKTV RLSQGALRS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.6701 | 3e-42 | seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00152426001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ420440 | 1e-46 | KJ420440.1 Brassica napus NAC transcription factor 91-1 (NAC91-1.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D3ASL5 | 1e-99 | A0A0D3ASL5_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6DAI3 | 1e-101 | A0A3P6DAI3_BRAOL; Uncharacterized protein (Fragment) | ||||
STRING | Bo2g103370.1 | 1e-100 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24590.2 | 9e-22 | TCV-interacting protein |
Publications ? help Back to Top | |||
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