PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00152277001

Common Name

GSBRNA2T00152277001, LOC106364199, LOC106385050

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 194aa MW: 22624.2 Da PI: 4.4124

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00152277001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	98.4	1e-30	17	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrF+P de+lv eyL+kkv + ++++ ++e++ ++v+PwdL +++e+y+F+k+++ + +k r t sgyW++ + + GSBRNA2T00152277001 17 LPPGFRFDPDDEDLVFEYLAKKVLHGPMDF--DLPELRSCNVDPWDLL---GDKNTEMYYFVKKEEIE----KKGRETLSGYWEECEE-E 96 79***********************999..49*********6...55778***99876....6789999*8866.6 PP NAM 91 evlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 ev+++ ++l g kkt++fy g++p+g+ t W+m e+rl GSBRNA2T00152277001 97 EVMESgdrgCNHLEGRKKTFAFYIGKRPRGTITPWIMYEFRL 138 6777657666677*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-33	6	166	IPR003441	NAC domain
PROSITE profile	PS51005	32.434	17	167	IPR003441	NAC domain
Pfam	PF02365	8.1E-19	18	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MDISTQRFAM NGRSMRLPPG FRFDPDDEDL VFEYLAKKVL HGPMDFDLPE LRSCNVDPWD 60 LLGDKNTEMY YFVKKEEIEK KGRETLSGYW EECEEEEVME SGDRGCNHLE GRKKTFAFYI 120 GKRPRGTITP WIMYEFRLLS SRATRWSSSS LPRGAVENWR AVKVIVKEEN EEEIEEEEQA 180 SDESDGEEVV QSR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-18	15	139	15	143	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-18	15	139	15	143	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-18	15	139	15	143	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-18	15	139	15	143	NO APICAL MERISTEM PROTEIN
4dul_A	5e-18	15	139	15	143	NAC domain-containing protein 19
4dul_B	5e-18	15	139	15	143	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00152277001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF974765	0.0	KF974765.1 Brassica napus NAC transcription factor 97-1 (NAC97-1.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013610161.1	1e-141	PREDICTED: NAC domain-containing protein 41
Refseq	XP_013659277.1	1e-141	NAC domain-containing protein 41-like
Refseq	XP_013680453.1	1e-141	NAC domain-containing protein 41-like
Refseq	XP_022569947.1	1e-141	NAC domain-containing protein 41-like
TrEMBL	A0A0D3E9S1	1e-139	A0A0D3E9S1_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6E816	1e-139	A0A3P6E816_BRAOL; Uncharacterized protein
STRING	Bo9g097190.1	1e-140	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14666	18	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50820.1	2e-89	NAC domain containing protein 97

Link Out ? help Back to Top
Entrez Gene	106364199 \| 106385050

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]