PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00151511001
Common NameGSBRNA2T00151511001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 321aa    MW: 34691.5 Da    PI: 4.5727
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00151511001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.13.8e-35381282101
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d+ ++elisw+e+g++f+v++  efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k
  GSBRNA2T00151511001  38 FLTKTYQLVDDPVYDELISWNEDGSTFIVWKAAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKLVPDR---------WEFSNDCFRRGEK 118
                          9****************************************************************999.........************* PP

                          XXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkk 101
                           ll++i+r+k
  GSBRNA2T00151511001 119 ILLRDIQRRK 128
                          ********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.6E-5634127IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.58E-3335127IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.5E-3635127IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.1E-3138127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-203861IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-2089101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1703.0E-5188216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MPGEQTGEVG GGCSAGNSGG SSGGGGGGEP QRSIPTPFLT KTYQLVDDPV YDELISWNED  60
GSTFIVWKAA EFARDLLPKY FKHNNFSSFV RQLNTYGFRK LVPDRWEFSN DCFRRGEKIL  120
LRDIQRRKIS LPAAAAAPVL AHVLSPSNSG EEQVISSNSS PAGTGGGGGG GSVGVAPQRT  180
TSCTTAPELM EENERLRKEN VQLSQELTKL KGLYSNIYKL MSNFTSGGAD CLKPLDLMPE  240
RQEMSEEAIE TGAGLKLLTP RLFGVSIGVK RARRDQELGA AAVEEDDNQE EEEQGSEDKS  300
EPMEENNSVD HNGPWLELGK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-2771271129Heat shock factor protein 1
5d5v_B5e-2771271129Heat shock factor protein 1
5d5v_D5e-2771271129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00151511001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325470.0AC232547.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009K01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013735528.10.0heat stress transcription factor B-2b-like
SwissprotQ9T0D31e-138HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A3P6A9F20.0A0A3P6A9F2_BRACM; Uncharacterized protein
STRINGBra000749.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-124HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]