PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00151323001
Common NameGSBRNA2T00151323001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 1017aa    MW: 113233 Da    PI: 7.6491
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00151323001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.22.3e-18930964135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  GSBRNA2T00151323001 930 CSHCGVQKTPQWRAGPLGAKTLCNACGVRFKSGRL 964
                          *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.140.10.102.6E-5132193IPR027295Quinoprotein alcohol dehydrogenase-like domain
Gene3DG3DSA:2.140.10.102.6E-5238274IPR027295Quinoprotein alcohol dehydrogenase-like domain
Gene3DG3DSA:2.140.10.102.6E-5345404IPR027295Quinoprotein alcohol dehydrogenase-like domain
Gene3DG3DSA:2.140.10.102.6E-5503563IPR027295Quinoprotein alcohol dehydrogenase-like domain
SuperFamilySSF577164.13E-13923985No hitNo description
SMARTSM004016.7E-16924978IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.82924960IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.1E-14928962IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.58E-14929977No hitNo description
PROSITE patternPS003440930955IPR000679Zinc finger, GATA-type
PfamPF003203.2E-16930964IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1017 aa     Download sequence    Send to blast
MRKRDLAILM LSGFAIFFTL QHEGDFAFKE AWFHLYDDYP VKHESDRLPP PLVADLNGDG  60
KKEVLVATND AKIQVLEPHW RRVDEGFSEA RVLADISLLP DKIRVASGRR AVAMSTGVID  120
RYYKDGTPQK QVLVVVTSGW SVLCFDHNLK KLWETNLQED FPHNAHHREI SISISNYTLK  180
HGDTGLVIVG GRMEMQPYNH MDPFEELGIT EQNAEKHRRS ATEKQPTEDS GGVNLRHFSV  240
YAFAGRTGVL RWSKKTDDVE AHTSDASQLV PQHNYKLDVH SINSRHPGEF ECREFRESIL  300
SVMPHHWDRR EDTLLKLAHF RRHKRKTLKK QAGKSTTFPF HKPEEHTPAG KDLSRKIPKL  360
IGKAARYAGS AKPKKGMQYI PTITNYTKLW WVPNVVVAHQ KEGIEAIHLP TGRTLCKLHL  420
LEGGLHADIN GDGVLDHVQA VGGNVGERTV VSGSMEVLKP CWAVATSGVP VREQLFNVSI  480
CHHTPFNFMH YGEFSRNFAQ ARDTSSLEIA TPILIPRDDG HKHRRSHGDV IFLTNRGEVT  540
SYTPDVHGRE PLWQWQLQTE ATWSNLPSPS GLTESGTVVP TLKPFSLRIH DNQPMILAGG  600
DQAAVIISPG GSVLASIELP SQPTHALITD DFSNDGLTDV IVMTSNGIYG FVQTRQPGAL  660
FFSSLVGCIL VVMAVIFVTQ HLNSVKVTRP TPLPPPPPFF FISFSLPSPT SPPNSSLTQE  720
MESVELSLTN METAVNADGA QNGDEFSVDD LLDFSSNDDV FFEDGAELKT QRNKGVSVSS  780
NDETTPDRSN DFPTACELAV PTDDLAELEW LSNFVDDSFA PYSAPTKKPV WLTVDRRHPV  840
TPVNVGSCFK APLPVKIRTK RPRTGVNLWS SLTDSPSSSP TSSSSSSSGY SSPLWLSGAE  900
FLDEKAVKRQ KNKKKKEFLS WEAQSQTRRC SHCGVQKTPQ WRAGPLGAKT LCNACGVRFK  960
SGRLLPEYRP ACSPTFSSEL HSNHHRKVIE MRQKKETSRD ADEPGMNRTV QAVQSF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.100450.0seed
Bna.61170.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00151323001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4628470.0AF462847.1 Arabidopsis thaliana AT3g51050/F24M12_90 mRNA, complete cds.
GenBankBT0011310.0BT001131.1 Arabidopsis thaliana At3g51050/F24M12_90 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022572434.10.0uncharacterized protein LOC106442462
TrEMBLM4D8R10.0M4D8R1_BRARP; Uncharacterized protein
STRINGBra012871.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51080.14e-97GATA transcription factor 6
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]