PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GATA

Protein Properties

Length: 1017aa MW: 113233 Da PI: 7.6491

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00151323001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	57.2	2.3e-18	930	964	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l GSBRNA2T00151323001 930 CSHCGVQKTPQWRAGPLGAKTLCNACGVRFKSGRL 964 *******************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.140.10.10	2.6E-5	132	193	IPR027295	Quinoprotein alcohol dehydrogenase-like domain
Gene3D	G3DSA:2.140.10.10	2.6E-5	238	274	IPR027295	Quinoprotein alcohol dehydrogenase-like domain
Gene3D	G3DSA:2.140.10.10	2.6E-5	345	404	IPR027295	Quinoprotein alcohol dehydrogenase-like domain
Gene3D	G3DSA:2.140.10.10	2.6E-5	503	563	IPR027295	Quinoprotein alcohol dehydrogenase-like domain
SuperFamily	SSF57716	4.13E-13	923	985	No hit	No description
SMART	SM00401	6.7E-16	924	978	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	11.82	924	960	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	8.1E-14	928	962	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	5.58E-14	929	977	No hit	No description
PROSITE pattern	PS00344	0	930	955	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	3.2E-16	930	964	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016021	Cellular Component	integral component of membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1017 aa Download sequence Send to blast
MRKRDLAILM LSGFAIFFTL QHEGDFAFKE AWFHLYDDYP VKHESDRLPP PLVADLNGDG 60 KKEVLVATND AKIQVLEPHW RRVDEGFSEA RVLADISLLP DKIRVASGRR AVAMSTGVID 120 RYYKDGTPQK QVLVVVTSGW SVLCFDHNLK KLWETNLQED FPHNAHHREI SISISNYTLK 180 HGDTGLVIVG GRMEMQPYNH MDPFEELGIT EQNAEKHRRS ATEKQPTEDS GGVNLRHFSV 240 YAFAGRTGVL RWSKKTDDVE AHTSDASQLV PQHNYKLDVH SINSRHPGEF ECREFRESIL 300 SVMPHHWDRR EDTLLKLAHF RRHKRKTLKK QAGKSTTFPF HKPEEHTPAG KDLSRKIPKL 360 IGKAARYAGS AKPKKGMQYI PTITNYTKLW WVPNVVVAHQ KEGIEAIHLP TGRTLCKLHL 420 LEGGLHADIN GDGVLDHVQA VGGNVGERTV VSGSMEVLKP CWAVATSGVP VREQLFNVSI 480 CHHTPFNFMH YGEFSRNFAQ ARDTSSLEIA TPILIPRDDG HKHRRSHGDV IFLTNRGEVT 540 SYTPDVHGRE PLWQWQLQTE ATWSNLPSPS GLTESGTVVP TLKPFSLRIH DNQPMILAGG 600 DQAAVIISPG GSVLASIELP SQPTHALITD DFSNDGLTDV IVMTSNGIYG FVQTRQPGAL 660 FFSSLVGCIL VVMAVIFVTQ HLNSVKVTRP TPLPPPPPFF FISFSLPSPT SPPNSSLTQE 720 MESVELSLTN METAVNADGA QNGDEFSVDD LLDFSSNDDV FFEDGAELKT QRNKGVSVSS 780 NDETTPDRSN DFPTACELAV PTDDLAELEW LSNFVDDSFA PYSAPTKKPV WLTVDRRHPV 840 TPVNVGSCFK APLPVKIRTK RPRTGVNLWS SLTDSPSSSP TSSSSSSSGY SSPLWLSGAE 900 FLDEKAVKRQ KNKKKKEFLS WEAQSQTRRC SHCGVQKTPQ WRAGPLGAKT LCNACGVRFK 960 SGRLLPEYRP ACSPTFSSEL HSNHHRKVIE MRQKKETSRD ADEPGMNRTV QAVQSF*

Sequence ? help Back to Top

Protein Sequence Length: 1017 aa Download sequence Send to blast

MRKRDLAILM LSGFAIFFTL QHEGDFAFKE AWFHLYDDYP VKHESDRLPP PLVADLNGDG  60
KKEVLVATND AKIQVLEPHW RRVDEGFSEA RVLADISLLP DKIRVASGRR AVAMSTGVID  120
RYYKDGTPQK QVLVVVTSGW SVLCFDHNLK KLWETNLQED FPHNAHHREI SISISNYTLK  180
HGDTGLVIVG GRMEMQPYNH MDPFEELGIT EQNAEKHRRS ATEKQPTEDS GGVNLRHFSV  240
YAFAGRTGVL RWSKKTDDVE AHTSDASQLV PQHNYKLDVH SINSRHPGEF ECREFRESIL  300
SVMPHHWDRR EDTLLKLAHF RRHKRKTLKK QAGKSTTFPF HKPEEHTPAG KDLSRKIPKL  360
IGKAARYAGS AKPKKGMQYI PTITNYTKLW WVPNVVVAHQ KEGIEAIHLP TGRTLCKLHL  420
LEGGLHADIN GDGVLDHVQA VGGNVGERTV VSGSMEVLKP CWAVATSGVP VREQLFNVSI  480
CHHTPFNFMH YGEFSRNFAQ ARDTSSLEIA TPILIPRDDG HKHRRSHGDV IFLTNRGEVT  540
SYTPDVHGRE PLWQWQLQTE ATWSNLPSPS GLTESGTVVP TLKPFSLRIH DNQPMILAGG  600
DQAAVIISPG GSVLASIELP SQPTHALITD DFSNDGLTDV IVMTSNGIYG FVQTRQPGAL  660
FFSSLVGCIL VVMAVIFVTQ HLNSVKVTRP TPLPPPPPFF FISFSLPSPT SPPNSSLTQE  720
MESVELSLTN METAVNADGA QNGDEFSVDD LLDFSSNDDV FFEDGAELKT QRNKGVSVSS  780
NDETTPDRSN DFPTACELAV PTDDLAELEW LSNFVDDSFA PYSAPTKKPV WLTVDRRHPV  840
TPVNVGSCFK APLPVKIRTK RPRTGVNLWS SLTDSPSSSP TSSSSSSSGY SSPLWLSGAE  900
FLDEKAVKRQ KNKKKKEFLS WEAQSQTRRC SHCGVQKTPQ WRAGPLGAKT LCNACGVRFK  960
SGRLLPEYRP ACSPTFSSEL HSNHHRKVIE MRQKKETSRD ADEPGMNRTV QAVQSF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.10045	0.0	seed
Bna.6117	0.0	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00151323001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF462847	0.0	AF462847.1 Arabidopsis thaliana AT3g51050/F24M12_90 mRNA, complete cds.
GenBank	BT001131	0.0	BT001131.1 Arabidopsis thaliana At3g51050/F24M12_90 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022572434.1	0.0	uncharacterized protein LOC106442462
TrEMBL	M4D8R1	0.0	M4D8R1_BRARP; Uncharacterized protein
STRING	Bra012871.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51080.1	4e-97	GATA transcription factor 6

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]