PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00151271001
Common NameGSBRNA2T00151271001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 288aa    MW: 33568.3 Da    PI: 7.0925
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00151271001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.55e-34301212102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k++ei+ed+++++++sw++ g+sfvv+d ++f++ +Lp++Fkhsnf+SF+RQLn+YgF+k++ e+         weF+++ F  g++
  GSBRNA2T00151271001  30 FLIKTFEIVEDPSTDHIVSWNRGGTSFVVWDLHSFSEFLLPRHFKHSNFSSFIRQLNTYGFRKIEAER---------WEFANEGFLLGQR 110
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++ikr++s
  GSBRNA2T00151271001 111 HLLKSIKRRAS 121
                          ********976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-3526119IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.99E-3326119IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-5426119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.6E-193053IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-2930119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.6E-196880IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406993IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.6E-198193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MNPFLHREND PPPSPPKPVE GLHEIGPPPF LIKTFEIVED PSTDHIVSWN RGGTSFVVWD  60
LHSFSEFLLP RHFKHSNFSS FIRQLNTYGF RKIEAERWEF ANEGFLLGQR HLLKSIKRRA  120
SFALSSSSIQ DPCVELRKEK QLLLMELVSL RQQQETNKSY IKAMEQRIEG AERKQRKMMS  180
FLARAMQSPS FLHQLLKQRD MRVKELEDEA AERGRGSSSV SELEALALEM QGYGKQKNVK  240
EEEDMVVERE LDDGFWEELL SNETPQHQIT FIIHFQIQKN KQFPKMV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-222812118122Heat shock factor protein 1
5hdg_A3e-22281218112Heat shock factor protein 1
5hdn_A3e-22281218112Heat shock factor protein 1
5hdn_B3e-22281218112Heat shock factor protein 1
5hdn_C3e-22281218112Heat shock factor protein 1
5hdn_D3e-22281218112Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118LKSIKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.132540.0microspore
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00151271001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013672512.10.0heat stress transcription factor A-7a-like
SwissprotQ9SV121e-145HFA7A_ARATH; Heat stress transcription factor A-7a
TrEMBLA0A3P6F2C20.0A0A3P6F2C2_BRAOL; Uncharacterized protein
STRINGBo7g101300.10.0(Brassica oleracea)
STRINGBo7g101320.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.11e-138heat shock transcription factor A7A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Nie S,Yue H,Xing D
    A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance.
    Plant Physiol., 2016.
    [PMID:26099269]