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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00151271001 | ||||||||
Common Name | GSBRNA2T00151271001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HSF | ||||||||
Protein Properties | Length: 288aa MW: 33568.3 Da PI: 7.0925 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.5 | 5e-34 | 30 | 121 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl k++ei+ed+++++++sw++ g+sfvv+d ++f++ +Lp++Fkhsnf+SF+RQLn+YgF+k++ e+ weF+++ F g++ GSBRNA2T00151271001 30 FLIKTFEIVEDPSTDHIVSWNRGGTSFVVWDLHSFSEFLLPRHFKHSNFSSFIRQLNTYGFRKIEAER---------WEFANEGFLLGQR 110 9****************************************************************999.........************* PP XXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkks 102 +ll++ikr++s GSBRNA2T00151271001 111 HLLKSIKRRAS 121 ********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.4E-35 | 26 | 119 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.99E-33 | 26 | 119 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.4E-54 | 26 | 119 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.6E-19 | 30 | 53 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.7E-29 | 30 | 119 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.6E-19 | 68 | 80 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 69 | 93 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.6E-19 | 81 | 93 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MNPFLHREND PPPSPPKPVE GLHEIGPPPF LIKTFEIVED PSTDHIVSWN RGGTSFVVWD 60 LHSFSEFLLP RHFKHSNFSS FIRQLNTYGF RKIEAERWEF ANEGFLLGQR HLLKSIKRRA 120 SFALSSSSIQ DPCVELRKEK QLLLMELVSL RQQQETNKSY IKAMEQRIEG AERKQRKMMS 180 FLARAMQSPS FLHQLLKQRD MRVKELEDEA AERGRGSSSV SELEALALEM QGYGKQKNVK 240 EEEDMVVERE LDDGFWEELL SNETPQHQIT FIIHFQIQKN KQFPKMV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 4e-22 | 28 | 121 | 18 | 122 | Heat shock factor protein 1 |
5hdg_A | 3e-22 | 28 | 121 | 8 | 112 | Heat shock factor protein 1 |
5hdn_A | 3e-22 | 28 | 121 | 8 | 112 | Heat shock factor protein 1 |
5hdn_B | 3e-22 | 28 | 121 | 8 | 112 | Heat shock factor protein 1 |
5hdn_C | 3e-22 | 28 | 121 | 8 | 112 | Heat shock factor protein 1 |
5hdn_D | 3e-22 | 28 | 121 | 8 | 112 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 118 | LKSIKRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.13254 | 0.0 | microspore |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00151271001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013672512.1 | 0.0 | heat stress transcription factor A-7a-like | ||||
Swissprot | Q9SV12 | 1e-145 | HFA7A_ARATH; Heat stress transcription factor A-7a | ||||
TrEMBL | A0A3P6F2C2 | 0.0 | A0A3P6F2C2_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g101300.1 | 0.0 | (Brassica oleracea) | ||||
STRING | Bo7g101320.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1256 | 28 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51910.1 | 1e-138 | heat shock transcription factor A7A |
Publications ? help Back to Top | |||
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