PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00151034001
Common NameGSBRNA2T00151034001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 521aa    MW: 58011.2 Da    PI: 5.9376
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00151034001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.52.5e-27288341256
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          ++++Wt+eLH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQk+R++
  GSBRNA2T00151034001 288 KKVDWTQELHKKFVQAVEQL-GVDQAIPSRILELMKVDGLTRHNVASHLQKFRMH 341
                          689*****************.********************************96 PP
2Response_reg27.81.3e-103212614109
                          HHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS CS
         Response_reg  14 lrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKp 101
                           r+ le+ +y +v++++d +eal  + ++   +++ ++ ++ +  d  e +k +++++  lp i++++    +++ +++ +Ga +fl Kp
  GSBRNA2T00151034001  32 TRSKLESMDY-IVTTFSDESEALSAVVKSPesFHIAIVEVNTSAED--ESFKYLEAAKGLLPTIMISDDHCIATTMKCIALGAVEFLQKP 118
                          56678999**.***************776667********999988..899***99999******************************* PP

                          --HHHHHH CS
         Response_reg 102 fdpeelvk 109
                           +pe+l +
  GSBRNA2T00151034001 119 LSPEKLKN 126
                          *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23004.2E-1317139No hitNo description
SuperFamilySSF521721.85E-1117133IPR011006CheY-like superfamily
PROSITE profilePS5011019.88618132IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.1E-628126IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.03E-636131No hitNo description
PROSITE profilePS5129416.406284343IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.9E-26286343IPR009057Homeodomain-like
SuperFamilySSF466892.42E-18286344IPR009057Homeodomain-like
TIGRFAMsTIGR015579.3E-25288341IPR006447Myb domain, plants
PfamPF002491.5E-7290338IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MVFTANDLSK WESFPKGLRV LLLDGRISAA ETRSKLESMD YIVTTFSDES EALSAVVKSP  60
ESFHIAIVEV NTSAEDESFK YLEAAKGLLP TIMISDDHCI ATTMKCIALG AVEFLQKPLS  120
PEKLKNIWQH VVHKAFNDGG ASVSESLKPV KDSVVSMLNI DTNMTIDEKD PAPSTPQLRQ  180
VSRLLDQENR NCSVENVNSP IEKESTEDHD IGESKSVDTT NHEDNVIVKE ENGDGEKEEE  240
QGQTEEHKQE EGETGDSVNF NKKEDETNKP INKSSGNKNL SSNKASRKKV DWTQELHKKF  300
VQAVEQLGVD QAIPSRILEL MKVDGLTRHN VASHLQKFRM HRRNILPKDD HNHRWIQSRE  360
NHRQIQRQYN GFQQQHRPVM AYPVWGLPGV HPPGAVPPLW PPALPSAGQL PPWHFKPPYP  420
TLNGNTWGYP VGPPVTGTFF PPPITGTFST HPANQLDEEM IDQVIDQVVK EVISKPGMPL  480
PLGLKPPSPE SVLTELSRQD ISAVPSSSAS CQINGSRRLR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-16289340758ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00151034001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136894.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_009136895.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_009136896.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_009136897.10.0PREDICTED: two-component response regulator-like APRR2
SwissprotQ6LA430.0APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A397L6520.0A0A397L652_BRACM; Uncharacterized protein
STRINGBra012623.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57462747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.60.0ARR-B family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]