PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00150956001
Common NameGSBRNA2T00150956001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 259aa    MW: 29168 Da    PI: 7.5682
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00150956001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-2094144256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f taeeAa a+++a+ kl+ge
  GSBRNA2T00150956001  94 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFNTAEEAAMAYDRAAYKLRGE 144
                          59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.30E-3593152No hitNo description
PROSITE profilePS5103223.10394151IPR001471AP2/ERF domain
SMARTSM003802.4E-3794157IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-2394152IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.7E-3294151IPR001471AP2/ERF domain
PfamPF008472.4E-1495144IPR001471AP2/ERF domain
PRINTSPR003673.6E-1195106IPR001471AP2/ERF domain
PRINTSPR003673.6E-11117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAAIDMFNSS TNLSDPFKEE LMKVLKPFTN SVSSLPPIPN PIFGFNQTRP LGLNQLTPYQ  60
IYQIQNQLNQ RRNPTTSTLS PKPVAMKNVT AQKLYRGVRQ RHWGKWVAEI RLPKNRTRLW  120
LGTFNTAEEA AMAYDRAAYK LRGELARLNF PYIRHEFGDS RFKALHPSVE AKLEAICQSL  180
GKTELLPPKA EYQESECRSS LRADESLFSD ESHVGSSSPG TLLDFSDSGF DDESGSFVLE  240
KFPSVEIDWD AISKLSES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2193151160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-2193151463ATERF1
3gcc_A2e-2193151463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.277140.0seed
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00150956001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892601e-168AC189260.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021M22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109443.10.0PREDICTED: ethylene-responsive transcription factor ERF060-like
SwissprotO656651e-130ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLA0A397YDY30.0A0A397YDY3_BRACM; Uncharacterized protein
STRINGBra010657.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.13e-98ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]