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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00150671001 | ||||||||
Common Name | GSBRNA2T00150671001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Dof | ||||||||
Protein Properties | Length: 317aa MW: 34185 Da PI: 9.4179 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.7 | 5.1e-38 | 33 | 92 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +lkcprCds+ntkfCyynnyslsqPryfCkaC+ryWt+GG+lrnvPvGg+ rknk+++ GSBRNA2T00150671001 33 PPQLKCPRCDSSNTKFCYYNNYSLSQPRYFCKACKRYWTQGGTLRNVPVGGSYRKNKRVK 92 5689*****************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.5E-33 | 35 | 90 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 1.0E-25 | 36 | 90 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.723 | 36 | 90 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 38 | 74 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MPMISSTNTN PLASMQSKNM IVAPSHQQQQ QQPPQLKCPR CDSSNTKFCY YNNYSLSQPR 60 YFCKACKRYW TQGGTLRNVP VGGSYRKNKR VKRPATTTVA STASTTTSSS PNNPHHQISQ 120 FSSVNHHPLF YGLSDHVSSC NNLPMMVPSR FSDSSKTSSS SGLESEFISS GFSGLGALGL 180 GLPHYLNHDH TINSSFLNNS TTNKPFLLSG LFGSSVSSSS STLLQHPHKT INNGGEMMGQ 240 SHIRTLAPLP HVGGNTDDMN KEGKLDQISG NINGFMSSSS LNPSNNNNIW NNASVVNGAC 300 LDLTNNDVGS FLTSLI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00150671001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013656945.1 | 0.0 | dof zinc finger protein DOF1.4-like | ||||
Swissprot | Q9FZA4 | 1e-136 | DOF14_ARATH; Dof zinc finger protein DOF1.4 | ||||
TrEMBL | A0A078HE63 | 0.0 | A0A078HE63_BRANA; BnaC03g58500D protein | ||||
TrEMBL | A0A0D3BIM2 | 0.0 | A0A0D3BIM2_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g143320.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4709 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28310.2 | 1e-101 | Dof family protein |
Publications ? help Back to Top | |||
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