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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00150497001 | ||||||||
Common Name | GSBRNA2T00150497001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 476aa MW: 54116.4 Da PI: 6.0316 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 96.9 | 3e-30 | 4 | 135 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 pGf+F+P deelv +yL++k+ g++ ++ vi+e++i++++PwdL+ +k+k+++ wyf s +++ r++r+t sg Wk tg GSBRNA2T00150497001 4 KPGFEFRPYDEELVGFYLRQKLLGNHSLVDGVIREIKICSLDPWDLRfqSKIKSRDPVWYFLSLIENN---RGRQSRTTPSGSWKLTGDP 90 59************************999899**************853488888889***9998875...569**************** PP NAM 90 kevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128 +v ++ + ++g k++L+f k+++++++ ++Wvmhe + GSBRNA2T00150497001 91 VNVNDRwgnltgFRGKIGYKRVLTFSKAKSSSSSVSEWVMHELHY 135 *****97766664455**************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 36.917 | 3 | 156 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.05E-33 | 4 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.7E-17 | 5 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 476 aa Download sequence Send to blast |
MVEKPGFEFR PYDEELVGFY LRQKLLGNHS LVDGVIREIK ICSLDPWDLR FQSKIKSRDP 60 VWYFLSLIEN NRGRQSRTTP SGSWKLTGDP VNVNDRWGNL TGFRGKIGYK RVLTFSKAKS 120 SSSSVSEWVM HELHYTHTDL PEHKRTTYVI CRLEYKGDDV NILSTPTFAP TMANSASSAV 180 DQSLQGNSGH YNTLSEYDSG YQFNGNSDMQ QSFQGYSEYF NPTSEYGLAN QSNNWFSNLQ 240 QQQVPYSAPY QDDSDVWRQV VEEDWPSLID ERTCMRVDLI HHRPKKPVTG IFVGDSSDDD 300 TDSTIGKGTW RSTDSVGSKD VPYHAPKDAT PSLSTVEPLY NDSSDDDTDS TIGKGTWRST 360 DSVGSKDVPY HAPKYATPSL STVEPLYNDE PQEQPKQLML QLQGKQKVIN KQKSECEWKR 420 AEDSIKKAPS TYAVKQSWIV LEEISQRKSR WIYLKNIVGL LLFIIFIIGW IILLG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-12 | 5 | 132 | 17 | 137 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00150497001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013665599.1 | 0.0 | NAC domain-containing protein 1-like | ||||
Swissprot | Q0WV96 | 1e-137 | NAC1_ARATH; NAC domain-containing protein 1 | ||||
TrEMBL | A0A397XIR4 | 0.0 | A0A397XIR4_BRACM; Uncharacterized protein | ||||
STRING | Bra033296.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7658 | 16 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01010.1 | 1e-106 | NAC domain containing protein 1 |
Publications ? help Back to Top | |||
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