PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00150493001

Common Name

GSBRNA2T00150493001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 356aa MW: 41235.1 Da PI: 7.1265

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00150493001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	120.8	1.2e-37	5	127	3	127
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +GfrF Ptdee+v++yL+ k g + +++++i++vdi+++ePw+Lp k + +++++ wyfF ++d+ky++g+r++r+tksg Wk+tg + GSBRNA2T00150493001 5 VGFRFIPTDEEIVDYYLRLKNLGGDtSHVDKAISTVDICSFEPWELPsKsRRESRDQIWYFFGRKDNKYNRGERQSRKTKSGSWKKTGVT 94 7***************99877773666677***********433445577799*************************** PP NAM 90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127 +e+++k ++e++g k++Lvf+ + k +Wvmhey GSBRNA2T00150493001 95 TEIIRKrgNREKIGEKRVLVFH--S-----KPEWVMHEYV 127 99777888******..3.....556****6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	36.053	3	146	IPR003441	NAC domain
SuperFamily	SSF101941	9.42E-40	4	146	IPR003441	NAC domain
Pfam	PF02365	1.8E-21	5	127	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MENRVGFRFI PTDEEIVDYY LRLKNLGGDT SHVDKAISTV DICSFEPWEL PSKSRRESRD 60 QIWYFFGRKD NKYNRGERQS RKTKSGSWKK TGVTTEIIRK RGNREKIGEK RVLVFHSKPE 120 WVMHEYVSTF LTPTQTTYTV CKIIFKVEHN HSQFTHMNNS GEFEGLQNQR HFTGLLDAEK 180 ETQIHDALCR GLDNASTHDL NSFINCGNND EEEHGNLLFM QENRNDYRPK MSLTGFIDHS 240 DDEDSDSDLI SATTTVSLIL LCFGNSNRRI DQITDLQNSP NSTTKLMSPT QVVRKTSLDA 300 SKEMYDVQGN EMGEYYKMDQ EVINKKRGSF FYRKIRSCIK KTLLCSSIPT QEHDN*

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MENRVGFRFI PTDEEIVDYY LRLKNLGGDT SHVDKAISTV DICSFEPWEL PSKSRRESRD  60
QIWYFFGRKD NKYNRGERQS RKTKSGSWKK TGVTTEIIRK RGNREKIGEK RVLVFHSKPE  120
WVMHEYVSTF LTPTQTTYTV CKIIFKVEHN HSQFTHMNNS GEFEGLQNQR HFTGLLDAEK  180
ETQIHDALCR GLDNASTHDL NSFINCGNND EEEHGNLLFM QENRNDYRPK MSLTGFIDHS  240
DDEDSDSDLI SATTTVSLIL LCFGNSNRRI DQITDLQNSP NSTTKLMSPT QVVRKTSLDA  300
SKEMYDVQGN EMGEYYKMDQ EVINKKRGSF FYRKIRSCIK KTLLCSSIPT QEHDN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-22	6	126	20	140	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-22	6	126	20	140	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-22	6	126	20	140	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-22	6	126	20	140	NO APICAL MERISTEM PROTEIN
3swm_A	9e-22	6	126	23	143	NAC domain-containing protein 19
3swm_B	9e-22	6	126	23	143	NAC domain-containing protein 19
3swm_C	9e-22	6	126	23	143	NAC domain-containing protein 19
3swm_D	9e-22	6	126	23	143	NAC domain-containing protein 19
3swp_A	9e-22	6	126	23	143	NAC domain-containing protein 19
3swp_B	9e-22	6	126	23	143	NAC domain-containing protein 19
3swp_C	9e-22	6	126	23	143	NAC domain-containing protein 19
3swp_D	9e-22	6	126	23	143	NAC domain-containing protein 19
4dul_A	9e-22	6	126	20	140	NAC domain-containing protein 19
4dul_B	9e-22	6	126	20	140	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00150493001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013639072.1	0.0	PREDICTED: NAC domain-containing protein 5-like
Swissprot	O81914	1e-104	NAC5_ARATH; NAC domain-containing protein 5
TrEMBL	M4EWW3	0.0	M4EWW3_BRARP; Uncharacterized protein
STRING	Bra033298.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02250.1	1e-103	NAC domain containing protein 5

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]