PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00150119001 | ||||||||
Common Name | GSBRNA2T00150119001, LOC106429607 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 456aa MW: 50822.8 Da PI: 5.7121 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.4 | 1.2e-08 | 303 | 340 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gL+ qV++WF N R + GSBRNA2T00150119001 303 FEHflHPYPKDSDKIMLARQTGLSRGQVSNWFINARVR 340 554459******************************88 PP | |||||||
2 | BELL | 129.1 | 1.5e-41 | 165 | 236 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFrcL+dai++qi GSBRNA2T00150119001 165 ERQELQNKLSKLLSILDEVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAISGQI 236 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.8E-68 | 105 | 234 | IPR006563 | POX domain |
Pfam | PF07526 | 1.4E-47 | 112 | 233 | IPR006563 | POX domain |
Gene3D | G3DSA:1.20.5.350 | 4.3E-4 | 121 | 185 | No hit | No description |
PROSITE profile | PS50071 | 11.531 | 281 | 344 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.09E-11 | 284 | 345 | No hit | No description |
SMART | SM00389 | 7.0E-9 | 284 | 348 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.02E-17 | 285 | 351 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.6E-27 | 287 | 350 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.3E-18 | 301 | 340 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 456 aa Download sequence Send to blast |
MSTYYKSSSG SSDIYSRPNA SEFVPENAMI YTNPAVSYFP GEANNVSASK EIQELSSFGG 60 VASQAVEIQD SGSWRDQEDR TCFPVMMRPT TGQGLSLGIS SQIETQVVSG FHNSKYLEAA 120 QELLDEAVNV KKALKQFQPE GDKTEEDKEK NLQESITNPD LPQAERQELQ NKLSKLLSIL 180 DEVDRRYKQY YHQMQIVVSS FDVIAGCGAA KPYTALALQT ISRHFRCLRD AISGQILVIR 240 RSLGGEHDGL DGRGVGISRL RNVDQKVRQQ RALQRLGVMQ PHAWRPQRGL PDSSVLILRA 300 WLFEHFLHPY PKDSDKIMLA RQTGLSRGQV SNWFINARVR LWKPMVEEMY KEEFTDALEE 360 NVTNLYSGNN RPETTESQEQ QLVSSSNNGG ASTSAVARGG EDQLMMVTEM TRNGSGGMSL 420 TLGIPDNYEN SFQYLNSGNG QHRLGSSQLL QDFVA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 5e-15 | 290 | 348 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 5e-15 | 290 | 348 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bna.5108 | 0.0 | leaf| seed |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00150119001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013628973.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 7 | ||||
Refseq | XP_013725816.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Swissprot | Q9SIW1 | 0.0 | BLH7_ARATH; BEL1-like homeodomain protein 7 | ||||
TrEMBL | A0A3P6BF63 | 0.0 | A0A3P6BF63_BRAOL; Uncharacterized protein | ||||
STRING | Bra013076.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2869 | 25 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G16400.1 | 0.0 | BEL1-like homeodomain 7 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 106429607 |
Publications ? help Back to Top | |||
---|---|---|---|
|