PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00149533001
Common NameGSBRNA2T00149533001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 535aa    MW: 58817.5 Da    PI: 7.5863
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00149533001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.93.1e-31198255260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers  d+++++i+Y+g+H+h+k
  GSBRNA2T00149533001 198 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSY-DGQITDIIYKGTHDHPK 255
                          8****************************************.***************85 PP
2WRKY107.28e-34355413159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  GSBRNA2T00149533001 355 LDDGYRWRKYGQKVVRGNPNPRSYYKCTAPGCPVRKHVERASHDPKAVITTYEGKHNHD 413
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.365192256IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-26195256IPR003657WRKY domain
SuperFamilySSF1182909.02E-25195256IPR003657WRKY domain
SMARTSM007742.2E-32197255IPR003657WRKY domain
PfamPF031061.0E-23198254IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-37340415IPR003657WRKY domain
SuperFamilySSF1182901.57E-29347415IPR003657WRKY domain
PROSITE profilePS5081138.629350415IPR003657WRKY domain
SMARTSM007743.1E-39355414IPR003657WRKY domain
PfamPF031064.2E-26356413IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MNPQVNNDRK EFPVDPTARH DSSRGGGNGG GGARYKLMSP AKLPISRSTD ITIPPGLSPT  60
SFLESPVFIS NIKPEPSPTT GSLFKPRPVH VSSSSYTGRP FHQDSTEQKS SEFEFRPPAS  120
TMVYAELDKH KSEPAVQFQG QGYGSSHSPS SISEAAATSG DLRRPTQSSD IPAGSEVDES  180
VQALQNDPRG SAPSVLADDG YNWRKYGQKH VKGSEFPRSY YKCTHPNCEV KKLFERSYDG  240
QITDIIYKGT HDHPKPQPGR RNSGGLGMSA QEERVEKSVY NLAQAIEQAG NPEVPPTTED  300
GGEVAVSNKS KDDQEEDDPY TKRRRLDGTM EITPLVKPIR EPRVVVQTLS EVDILDDGYR  360
WRKYGQKVVR GNPNPRSYYK CTAPGCPVRK HVERASHDPK AVITTYEGKH NHDVPTSKSS  420
SNHHDNQPRF RPGETDTVSL NLGVGISSDG PDHTSNERQH QNQQQLINQT HPNGVGFRFV  480
HAAPVASYYA SLNGGLNQYA PRETQNETQN GDISSLNHSS YPYPHNIGRI QSGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-38196415877Probable WRKY transcription factor 4
2lex_A8e-38196415877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1321325KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.71580.0seed
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00149533001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931330.0KM593133.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013741870.10.0probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A398APL70.0A0A398APL7_BRACM; Uncharacterized protein
STRINGBra026414.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]