PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00149170001
Common NameGSBRNA2T00149170001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 585aa    MW: 65793.2 Da    PI: 10.1382
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00149170001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.18.3e-133282248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48
                         + W t+E++ll +avk++G+++W+++a+++     +  ++ +c++++q+++
  GSBRNA2T00149170001 32 QVWGTWEELLLTCAVKRHGSKDWDSVAKEVVsrssLDASAPSCRLKYQDLK 82
                         68**********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.77E-63084IPR009057Homeodomain-like
SMARTSM007176.0E-73084IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-43181IPR009057Homeodomain-like
PfamPF002493.4E-113282IPR001005SANT/Myb domain
PROSITE profilePS500906.0863482IPR017877Myb-like domain
CDDcd001673.50E-73482No hitNo description
SuperFamilySSF473706.93E-19244357IPR001487Bromodomain
SMARTSM002973.5E-20249358IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.5E-18251376IPR001487Bromodomain
CDDcd043692.38E-17260353No hitNo description
PfamPF004393.1E-12262343IPR001487Bromodomain
PROSITE profilePS5001412.968268339IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MNDDYATNIH SCSDSVNNRN GDGNGNQYQI SQVWGTWEEL LLTCAVKRHG SKDWDSVAKE  60
VVSRSSLDAS APSCRLKYQD LKRRFRDSVD DDGGRGNSDG EIPWLEQLRS LRVAELRRDV  120
QRCDESILSL QLKVKKLEEE EKDGDDVRSI NDETEPTRLN RETNESNSTP PVDKIADHER  180
LSGDSSINPD PDQKTATEEE EEGTVSRRSG MSHSGELGES GTYTGHRKRK GHEYMSGEDN  240
SIRGESGGNI KPDGSQSQPL IEIIKMIRSH PRGSVFEYRL RSQETKDYKR VIRQHLDIKT  300
IEKKMEEGSY VSSSLSFYRD LKLLFTNAIV FFPTSSSESK AAQELRTLVS NEMKKETGKS  360
SHRAIKSEGG SLLSKQKASA PPLVACKKKG SASKKTLPSS SSFKQKNEIQ VSEEKDVTIT  420
AIATRRSRKT SKGMEVVAKD TTMGRAKNNN KKQTDSKADS SNDDDEEKTP KIEKKRASEK  480
KKSVAEFLKR IKNNSPPKGK ETTSKDQKKS DDNVKKENSK AKPRELRSNS TGKKKVEVES  540
TENKRSSKRK QLKKEAEEET AAATRKRGRE LRKDNQQPKK RNKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1543550KRSSKRKQ
2577583PKKRNKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00149170001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0563931e-40AY056393.1 Arabidopsis thaliana AT3g60110/T2O9_90 mRNA, complete cds.
GenBankBT0005191e-40BT000519.1 Arabidopsis thaliana unknown protein (At3g60110/T2O9_90) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022573583.10.0uncharacterized protein LOC111214965
TrEMBLA0A3P6C7V40.0A0A3P6C7V4_BRACM; Uncharacterized protein
STRINGBra014512.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.10.0DNA-binding bromodomain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]