 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
GSBRNA2T00149083001 |
| Common Name | GSBRNA2T00149083001, LOC106380241 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
LBD |
| Protein Properties |
Length: 220aa MW: 24329.9 Da PI: 6.7859 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSBRNA2T00149083001 | genome | Genoscope | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 122.1 | 3e-38 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89
+C aCk+lrrkCa++Cv+apyf++eq +++fa++hk+FGasn +k+l++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +
GSBRNA2T00149083001 7 PCGACKFLRRKCANGCVFAPYFCHEQgASHFAAIHKVFGASNASKILSNLPISDRCEAAITISYEAQARLHDPIYGCVSHIFALQQQVVN 96
7*************************89************************************************************** PP
DUF260 90 lkaelallkee 100
l+a+l+ lk++
GSBRNA2T00149083001 97 LQAQLEILKQQ 107
*******9997 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 220 aa
Download sequence Send
to blast |
MSSSGSPCGA CKFLRRKCAN GCVFAPYFCH EQGASHFAAI HKVFGASNAS KILSNLPISD 60
RCEAAITISY EAQARLHDPI YGCVSHIFAL QQQVVNLQAQ LEILKQQAAQ SIMFADSPSS 120
ENPNSYYGDN TKTSYHHDHH QEHRNIHHHH HDETRLVYQT GSSGMVQHGD ATVNSYPTGN 180
CSGFGEVFIY PDLEQHLNSF NQDHLKELQS ANFGYISFS*
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12068116}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}. |
| Publications
? help Back to Top |
- Chalhoub B, et al.
Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
Science, 2014. 345(6199): p. 950-3
[PMID:25146293] - Gupta A,Singh M,Laxmi A
Interaction between glucose and brassinosteroid during the regulation of lateral root development in Arabidopsis.
Plant Physiol., 2015. 168(1): p. 307-20
[PMID:25810094] - Porco S, et al.
Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3.
Development, 2016. 143(18): p. 3340-9
[PMID:27578783] - Lee K,Seo PJ
High-temperature promotion of callus formation requires the BIN2-ARF-LBD axis in Arabidopsis.
Planta, 2017. 246(4): p. 797-802
[PMID:28766014] - Xu C,Cao H,Xu E,Zhang S,Hu Y
Genome-Wide Identification of Arabidopsis LBD29 Target Genes Reveals the Molecular Events behind Auxin-Induced Cell Reprogramming during Callus Formation.
Plant Cell Physiol., 2018. 59(4): p. 744-755
[PMID:29121271] - Xu C, et al.
Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
Nat Plants, 2018. 4(2): p. 108-115
[PMID:29358751]
|
