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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00149051001 | ||||||||
Common Name | GSBRNA2T00149051001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ZF-HD | ||||||||
Protein Properties | Length: 211aa MW: 23146.9 Da PI: 7.769 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 96.5 | 2.2e-30 | 46 | 100 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 k+rY+eClkNhA+++ ghavDGC+Efmps ge+g+ +alkCaAC CHRnFHR+e+e GSBRNA2T00149051001 46 KTRYRECLKNHAVNIAGHAVDGCCEFMPS-GEDGSLDALKCAACCCHRNFHRKETE 100 789*************************9.999********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 9.1E-27 | 47 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 8.0E-24 | 47 | 100 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.8E-26 | 48 | 98 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.696 | 49 | 98 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-32 | 133 | 209 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.83E-20 | 135 | 208 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 4.6E-27 | 148 | 204 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MNFEEQEEEM EMSGVHPSGG YDSLSGEGAT SSGGGGGGRR TSVGEKTRYR ECLKNHAVNI 60 AGHAVDGCCE FMPSGEDGSL DALKCAACCC HRNFHRKETE MISGRAHIVP TYFNRPPQLP 120 PPGYRQPAAS ADEEDTSNPS SSGGTKAKRF RTKFTAEQKE KMFAFAERLG WRMQKHDDVA 180 VEQFCAETGV RRQVLKIWMH NNKNSLGKKP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-35 | 147 | 205 | 17 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.15526 | 0.0 | seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00149051001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189407 | 0.0 | AC189407.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB059G16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013656495.1 | 1e-157 | zinc-finger homeodomain protein 2 | ||||
Swissprot | Q9SB61 | 1e-112 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A078GHR4 | 1e-155 | A0A078GHR4_BRANA; BnaA08g14660D protein | ||||
STRING | Bra010485.1-P | 1e-155 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4505 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 1e-101 | homeobox protein 22 |
Publications ? help Back to Top | |||
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