PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00148114001

Common Name

GSBRNA2T00148114001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 270aa MW: 30569.6 Da PI: 9.8539

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00148114001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.5	7.6e-16	124	213	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k +++s+v+ +l lp++f+ +h + + ++tl de+ + k+ +k++ l++GW++F+ +++L +gD vvF+l++ + GSBRNA2T00148114001 124 FIKPMLQSHVTGGFWLGLPRSFCHTHlpK----YDEMITLVDENEDEAVTKYLADKNG----LSGGWRGFAIDHQLVDGDAVVFHLINPT 205 89*******************999443....3458***********777777....**********************9867 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 +f +v ++r GSBRNA2T00148114001 206 TF--KVYIIR 213 77..888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	8.6E-20	115	214	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.85E-25	117	215	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.14E-24	122	213	No hit	No description
PROSITE profile	PS50863	11.082	124	215	IPR003340	B3 DNA binding domain
SMART	SM01019	6.1E-21	124	215	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.7E-14	124	213	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MVESKYEQIR LKRVEENKKR MIELNLNKLS HSLRLSSPSP KPSPAKARTP RTPVDSSEVR 60 RSSRAKNPPP SYKEFGLEPL ERPRRSYQRK DLLNRVYASD DARVYAIDRA EALQSSLEPE 120 FPSFIKPMLQ SHVTGGFWLG LPRSFCHTHL PKYDEMITLV DENEDEAVTK YLADKNGLSG 180 GWRGFAIDHQ LVDGDAVVFH LINPTTFKVY IIRVNDESNN GSGGSNEKEL VIKPNKNQEE 240 KNVSEVPPLS NSGKRKRRGN NICHKSLSC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	89	RRSYQRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.5416	0.0	leaf\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00148114001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189312	2e-96	AC189312.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034L08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013726982.1	0.0	B3 domain-containing protein At3g19184-like
Swissprot	Q1G3M3	1e-119	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A3P6GF42	0.0	A0A3P6GF42_BRAOL; Uncharacterized protein
STRING	Bo6g124000.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3744	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-104	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]