PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00147665001
Common NameGSBRNA2T00147665001, LOC106348555
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 330aa    MW: 36357.2 Da    PI: 5.1157
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00147665001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.39.1e-18219253135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  GSBRNA2T00147665001 219 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 253
                          99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.0E-821307IPR016679Transcription factor, GATA, plant
SMARTSM004018.7E-18213263IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.635213249IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-14214250IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577168.08E-16215277No hitNo description
CDDcd002026.36E-15218265No hitNo description
PfamPF003201.2E-15219253IPR000679Zinc finger, GATA-type
PROSITE patternPS003440219244IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEEEAHEFLH TADHFAVDDL LVDFSNDDDE ENDVIVDSDG ANTALAVTDS SNSSSLSPVG  60
LTSFQGDVQD GTSFSGDLCV PSDELAELEW LSNFVEDSFS TDDVQKLQLI SGYKARPDPK  120
PEPENPNSSS PIFTTDVSVP AKARSKRSRA AACNWASRGL LMEAVYDNPF TGETILSRHH  180
LSPPTSPASM TQPVKKQALD GFRRKKDFLL DSGAEERRCL HCATDKTPQW RTGPMGPKTL  240
CNACGVRYKS GRLVPEYRPA ASPTFVLAKH SNSHRKVMEL RRQKEMTKAH HEFIHNHHGT  300
ETAMIFDVSS DGDDYLIHHN VGPDFGQLI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.78810.0flower| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00147665001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151105.10.0PREDICTED: GATA transcription factor 12
RefseqXP_013643773.10.0GATA transcription factor 12
SwissprotP697811e-173GAT12_ARATH; GATA transcription factor 12
TrEMBLM4D0660.0M4D066_BRARP; GATA transcription factor
STRINGBra009864.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66252644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-134GATA transcription factor 12
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]