PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GATA

Protein Properties

Length: 330aa MW: 36357.2 Da PI: 5.1157

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00147665001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	55.3	9.1e-18	219	253	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l GSBRNA2T00147665001 219 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 253 99*****************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	4.0E-82	1	307	IPR016679	Transcription factor, GATA, plant
SMART	SM00401	8.7E-18	213	263	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	11.635	213	249	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.3E-14	214	250	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	8.08E-16	215	277	No hit	No description
CDD	cd00202	6.36E-15	218	265	No hit	No description
Pfam	PF00320	1.2E-15	219	253	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	219	244	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0009416	Biological Process	response to light stimulus
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MEEEAHEFLH TADHFAVDDL LVDFSNDDDE ENDVIVDSDG ANTALAVTDS SNSSSLSPVG 60 LTSFQGDVQD GTSFSGDLCV PSDELAELEW LSNFVEDSFS TDDVQKLQLI SGYKARPDPK 120 PEPENPNSSS PIFTTDVSVP AKARSKRSRA AACNWASRGL LMEAVYDNPF TGETILSRHH 180 LSPPTSPASM TQPVKKQALD GFRRKKDFLL DSGAEERRCL HCATDKTPQW RTGPMGPKTL 240 CNACGVRYKS GRLVPEYRPA ASPTFVLAKH SNSHRKVMEL RRQKEMTKAH HEFIHNHHGT 300 ETAMIFDVSS DGDDYLIHHN VGPDFGQLI*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.7881	0.0	flower\| seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269\|PubMed:25265867}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250\|UniProtKB:Q8LAU9, ECO:0000269\|PubMed:25265867}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00530	DAP	Transfer from AT5G25830	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00147665001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009151105.1	0.0	PREDICTED: GATA transcription factor 12
Refseq	XP_013643773.1	0.0	GATA transcription factor 12
Swissprot	P69781	1e-173	GAT12_ARATH; GATA transcription factor 12
TrEMBL	M4D066	0.0	M4D066_BRARP; GATA transcription factor
STRING	Bra009864.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6625	26	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25830.1	1e-134	GATA transcription factor 12

Link Out ? help Back to Top
Entrez Gene	106348555

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Ravindran P,Verma V,Stamm P,Kumar PP A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor. Mol Plant, 2017. 10(10): p. 1307-1320 [PMID:28917589]