PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00147662001
Common NameGSBRNA2T00147662001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 225aa    MW: 24413.1 Da    PI: 5.6844
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00147662001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-183585155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + y+GVr +  +g+Wv+eIr+p++   + r++lg+f ++e+Aa+a++ a+++++g
  GSBRNA2T00147662001 35 PVYRGVRKRN-WGKWVSEIREPRK---KSRIWLGTFPSPEMAARAHDVAALSIKG 85
                         68*****887.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-133585IPR001471AP2/ERF domain
SMARTSM003806.5E-343699IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-313694IPR001471AP2/ERF domain
PROSITE profilePS5103223.6573693IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-213694IPR016177DNA-binding domain
PRINTSPR003675.2E-103748IPR001471AP2/ERF domain
CDDcd000184.08E-323795No hitNo description
PRINTSPR003675.2E-105975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MTALDSTFKN SATNSVSQDT KKEKTNAVRD SGKHPVYRGV RKRNWGKWVS EIREPRKKSR  60
IWLGTFPSPE MAARAHDVAA LSIKGASAIL NFPDLAGSFP RPSSLSPRDI QAAALKAAHM  120
EIIMTPSQSS TSSSSFTFSS SQSSSSLESL VSSSGTGSEE LGEIVELPSL GSSYDGTTQL  180
SNEFIFSDPA DFWVYPPHQL LEGDYEMIPG SFSQDWDLSG LFNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1833931172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00529DAPTransfer from AT5G25810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00147662001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151103.11e-163PREDICTED: ethylene-responsive transcription factor TINY
SwissprotQ391271e-105TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLM4D0641e-161M4D064_BRARP; Uncharacterized protein
STRINGBra009862.1-P1e-162(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.17e-98ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]