PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00147640001
Common NameGSBRNA2T00147640001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 271aa    MW: 30373.6 Da    PI: 7.2178
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00147640001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3345.2e-11321041388
                          TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                   B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                          ++  ++p +f+++  g    +  +++  ++g+sW++ l  ++ +++ ++ ++ W eFv++n L  +D+++F++ +++
  GSBRNA2T00147640001  32 KSVRIIPEEFVRSAPGA--FEHRVVFSVRWGNSWQLWL--QRDKNGlFMEEEDWDEFVSDNFLGPNDVLLFTHADTM 104
                          355699*****999655..3446***************..88887879999*********************76533 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-1413112IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.3E-1415113IPR015300DNA-binding pseudobarrel domain
CDDcd100172.86E-1217112No hitNo description
SMARTSM010191.7E-1319114IPR003340B3 DNA binding domain
PROSITE profilePS5086310.98320114IPR003340B3 DNA binding domain
PfamPF023626.6E-932103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-5170257IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-7170257IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0053177269IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MSGKSVYNLL QDNVSKPRFC KSLSSGETWS SKSVRIIPEE FVRSAPGAFE HRVVFSVRWG  60
NSWQLWLQRD KNGLFMEEED WDEFVSDNFL GPNDVLLFTH ADTMFIEVQI YKQASYHLKE  120
ITSAPLQADP QAEVVTPMPQ TSPPAPAPAS IKTIHIQAGA HVNSPEQYLS NPSNPFFVKK  180
LGKKIDVLYV SHLVTEKYGL QFGPHNSTMF YLLPNEKIEA NTKIYGGCAC FNGWAAICRK  240
YKLKQGDAVV CELERSGGVV TAVRLHFPNE *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00147640001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151073.10.0PREDICTED: B3 domain-containing protein At5g25470-like
RefseqXP_013643746.10.0B3 domain-containing protein At5g25470-like
RefseqXP_013663090.10.0B3 domain-containing protein At5g25470-like
SwissprotQ680D98e-98Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBLM4D0440.0M4D044_BRARP; Uncharacterized protein
STRINGBra009842.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25470.21e-100B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]