 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
GSBRNA2T00147500001 |
| Common Name | GSBRNA2T00147500001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
WRKY |
| Protein Properties |
Length: 314aa MW: 35517.2 Da PI: 6.7998 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSBRNA2T00147500001 | genome | Genoscope | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 82.1 | 5.6e-26 | 121 | 183 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE.EEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv.veitYegeHnhe 59
ldDg++WrKYGqK++ g++fpr+YYrCt++ +C+++k+v+rs+e+ ++ +ei Y+g H ++
GSBRNA2T00147500001 121 LDDGFSWRKYGQKDILGAKFPRGYYRCTYRksqRCEATKQVQRSNENHQMlFEISYRGIHSCS 183
59***************************98889***********99987479*******997 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 314 aa
Download sequence Send
to blast |
MERKSNSGEW EKMKKEISEL MTEGRDYAHE LKFQLGSSSS DQESREHLAK KILESYHKSL 60
TIMNHPAELD QVSPHIHGGG SPKSDDSDQE PHQNIKSSKK SMPRWTEKVR ITPGAEIDRT 120
LDDGFSWRKY GQKDILGAKF PRGYYRCTYR KSQRCEATKQ VQRSNENHQM LFEISYRGIH 180
SCSQAANVRS AIPVRVLEPT QPQEHENLEM VKESLDAGHH NYNHQAHLHQ TLQYHLSSTP 240
TLESNNMMLQ LADQNIDLFG STSFSSDLGA NVNYDYLASH SVGSVSHSTS NSPSESPFES 300
FDPNNPFKGF GGF*
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Accumulates during developmental leaf senescence. {ECO:0000269|PubMed:22268143}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SUP6}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:22268143}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KF430047 | 0.0 | KF430047.1 Brassica rapa WRKY transcription factor 30 (WRKY30) mRNA, complete cds. |
| Publications
? help Back to Top |
- Chalhoub B, et al.
Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
Science, 2014. 345(6199): p. 950-3
[PMID:25146293] - Jiang W,Wu J,Zhang Y,Yin L,Lu J
Isolation of a WRKY30 gene from Muscadinia rotundifolia (Michx) and validation of its function under biotic and abiotic stresses.
Protoplasma, 2015. 252(5): p. 1361-74
[PMID:25643917] - Kanofsky K,Bahlmann AK,Hehl R,Dong DX
Combinatorial requirement of W- and WT-boxes in microbe-associated molecular pattern-responsive synthetic promoters.
Plant Cell Rep., 2017. 36(6): p. 971-986
[PMID:28341984]
|
