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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
GSBRNA2T00146800001 |
| Common Name | GSBRNA2T00146800001 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
WOX |
| Protein Properties |
Length: 321aa MW: 35542.2 Da PI: 7.4995 |
| Description |
WOX family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSBRNA2T00146800001 | genome | Genoscope | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 56 | 6.9e-18 | 51 | 111 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
++R+++++eq+++Le+ F++ +p +ee++++ ++l ++ +++V++WFqNr+ + k+
GSBRNA2T00146800001 51 KPRWNPKPEQIRILESIFNSgIVNPPREEIQRIRTRLqeygQIGDANVFYWFQNRKSRAKH 111
89*****************99*************************************995 PP
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| 2 | Wus_type_Homeobox | 111.7 | 4e-36 | 50 | 112 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
+++RW+P+peQi+iLe++++sG+++P++eeiqri+++L+eyG+i+d+NVfyWFQNrk+R ++k
GSBRNA2T00146800001 50 PKPRWNPKPEQIRILESIFNSGIVNPPREEIQRIRTRLQEYGQIGDANVFYWFQNRKSRAKHK 112
579**********************************************************99 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 321 aa
Download sequence Send
to blast |
MSSSNKNWPS MFKSKPCNKH HHRDVDTPSS MPYSNCNIPS PFSSDRVPDP KPRWNPKPEQ 60
IRILESIFNS GIVNPPREEI QRIRTRLQEY GQIGDANVFY WFQNRKSRAK HKLRVLKKNP 120
KMLGCNPSKT RKEKIISPSD NPTDPCFGLV NHETGLFPGQ NNELVITEPA SFLYPDDNNP 180
SLTQSAFGFG GFVVPVVAEE RLELAGTSNG VNMNIPEINF GGGENGYFPN SVPVTVPLTI 240
NQSQVLSGGG DIGDYVSPVR LTVFINDMPF DVAAGLFNVK EAFGNNAMLI NSFGQPILTD 300
EFGVTFQPLQ NGAVYYLVSF *
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Detected in the egg cell and the central cell of the embryo sac (PubMed:14711878). After fertilization, it is expressed in the zygote (PubMed:14711878). After the first division of the zygote, it is detected exclusively in the basal daughter cell, while WOX2 is expressed in the apical daughter cell (PubMed:14711878). Through the 16-cell stage, it is expressed in all descendants of the basal daughter, the developing suspensor and the hypophyseal cell (PubMed:14711878). After the hypophysis had divided, expression stops in descendants, but remains present in the extra embryonic suspensor (PubMed:14711878). Moreover it is found in the cellularized endosperm of the micropylar region during the globular and heart stages of embryogenesis (PubMed:14711878). Not expressed later in embryogenesis or in postembryonic stages (PubMed:14711878). Activated in the zygote after fertilization (PubMed:21316593). {ECO:0000269|PubMed:14711878, ECO:0000269|PubMed:21316593}. |
| Uniprot | TISSUE SPECIFICITY: Expressed only in the egg cell (PubMed:21316593). Not detected in the pollen tube (PubMed:21316593). Expressed in the zygote, the basal cell, and later the suspensor (PubMed:21802295). Expressed in all suspensor cells, except the hypophysis, and in the embryo surrounding region (ESR) endosperm cells (PubMed:22427333). Strongly expressed in the suspensor cells, with a weak expression also detected throughout the developing embryo (PubMed:22827849). {ECO:0000269|PubMed:21316593, ECO:0000269|PubMed:21802295, ECO:0000269|PubMed:22427333, ECO:0000269|PubMed:22827849}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor, which may be involved in embryonic patterning (PubMed:14711878). May be required for basal embryo development after fertilization (PubMed:14711878). Acts partially redundantly with STIP in promoting embryonic cell division and proliferation (PubMed:17706632). Promotes cotyledon boundary formation by maintaining the symmetry in CUC genes expression domains (PubMed:22827849). {ECO:0000269|PubMed:17706632, ECO:0000269|PubMed:22827849, ECO:0000303|PubMed:14711878}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2 (PubMed:21316593). Up-regulated by CLE8 (PubMed:22427333). {ECO:0000269|PubMed:21316593, ECO:0000269|PubMed:22427333}. |
| Publications
? help Back to Top |
- Xiao W, et al.
DNA methylation is critical for Arabidopsis embryogenesis and seed viability.
Plant Cell, 2006. 18(4): p. 805-14
[PMID:16531498] - Wang W, et al.
Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice.
PLoS Genet., 2014. 10(3): p. e1004154
[PMID:24625559] - Chalhoub B, et al.
Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
Science, 2014. 345(6199): p. 950-3
[PMID:25146293] - Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S
Wuschel-related homeobox 8/9 is important for proper embryo patterning in the gymnosperm Norway spruce.
J. Exp. Bot., 2014. 65(22): p. 6543-52
[PMID:25205582] - Ueda M, et al.
Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
Genes Dev., 2017. 31(6): p. 617-627
[PMID:28404632]
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