PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00146759001

Common Name

GSBRNA2T00146759001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 314aa MW: 36718.9 Da PI: 10.0448

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00146759001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.3	6.6e-33	176	233	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp+vv++tYe++Hnh+ GSBRNA2T00146759001 176 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSYQDPTVVITTYESQHNHP 233 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.0E-34	160	235	IPR003657	WRKY domain
SuperFamily	SSF118290	7.45E-29	168	235	IPR003657	WRKY domain
PROSITE profile	PS50811	31.984	170	235	IPR003657	WRKY domain
SMART	SM00774	6.1E-38	175	234	IPR003657	WRKY domain
Pfam	PF03106	1.9E-25	176	233	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MTVYAWFARK DKCQVSADKY EILKIITKIG KNGISPFLCY DGLRAEREKR KPTLELGKDG 60 FRPGLKGTCL GPYQEYILHL SKSWSWLYEE VVQVSPRNKT DCFSFFMSFS HCSLFRTLLS 120 FLVRLSPSFD PSFVGPVRHI RQRSKDFRVK TKKKEEKKQR EPRVSFVTKT EVEHLEDGYR 180 WRKYGQKAVK NSPYPRSYYR CTTQKCNVKK RVERSYQDPT VVITTYESQH NHPIPTSRRS 240 ALFSGPTTSN YNSPVSDLII NTPRSFSNDD LLRVPYAAVN VNANYQQQQN QEFQNDYELL 300 KDMFPSVFFK QEP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-27	168	236	10	78	Probable WRKY transcription factor 4
2lex_A	4e-27	168	236	10	78	Probable WRKY transcription factor 4
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00146759001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC246569	0.0	KC246569.1 Brassica napus WRKY transcription factor 8.1 (WRKY8.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013619625.1	1e-116	PREDICTED: probable WRKY transcription factor 8 isoform X2
TrEMBL	A0A0D3AUJ9	1e-114	A0A0D3AUJ9_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6DY27	1e-114	A0A3P6DY27_BRAOL; Uncharacterized protein (Fragment)
STRING	Bo2g130010.1	1e-115	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46350.1	6e-78	WRKY DNA-binding protein 8

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]