PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00146589001
Common NameGSBRNA2T00146589001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 961aa    MW: 105903 Da    PI: 8.9766
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00146589001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.61.1e-40106182278
                          -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          Cqv++C++dls ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  GSBRNA2T00146589001 106 CQVDNCNEDLSVAKDYHRRHKVCEVHSKATKALVGNQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTQP 182
                          **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.4E-3398167IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.197103180IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.67E-38104184IPR004333Transcription factor, SBP-box
PfamPF031102.3E-29106179IPR004333Transcription factor, SBP-box
SuperFamilySSF484032.49E-8725853IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.1E-6764852IPR020683Ankyrin repeat-containing domain
CDDcd002042.90E-7765851No hitNo description
PROSITE profilePS502979.33798851IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 961 aa     Download sequence    Send to blast
MDEVGPQVAG PVSIHHPIGR KRDLYYQMSN RQPYWLVPSQ PQNDWNPKMW EWDSQRFEAK  60
PVEAEVGNCS TQRGLDLNLS SGVMEETTRP NKKVKSGSPG RNYPKCQVDN CNEDLSVAKD  120
YHRRHKVCEV HSKATKALVG NQMQRFCQQC SRFHLLSEFD EGKRSCRRRL AGHNRRRRKT  180
QPEEVTSGGA VAASDKNKAN MDVMALLTAL ACAQGRNGSQ PNGSPAVPQR EQLLQILNKI  240
NALPLPMDLV SKLNSIGVLA RKNLDQPMNS RNDVNGGDSS PSTMDLLAVL SSTLGSSAPE  300
AIAFLSKGGF DNKESNDKTK LTSPEKRTLE FPPFVGGERT SSSNNPSPSQ ETRSSSLSLQ  360
LFTSSPEDER QQPTVASSGK YYSSASSNPV EDRSPSSSPV MQELFPMQTS PETMRSNNCK  420
NSSPSPRNSC LPLELFGGSN RGAAAAAANP SYASSGSDYS PPSLNSDSQD RTGKIVFKLL  480
GKDPSQLPGT LRTEISSWLS SIPSEMESYI RPGCVILSVY VAMSASAWEQ LEENLVQRVS  540
SLVQDSEFWS NTRFLVNTGR QLASYKHGKI RLSKSWRTLS SPELITVSPV AVVAGEETTL  600
VVRGRSLTND GISFRCAHMG NYTSMEVTGT AHRSTKFDEL NVNRFKVKGP GSMGRCFVEV  660
ENGFRSDSFP LIIANATICK ELNRLEDCPS SREEVLCFLN ELGWLFQKKC RSESDFSLPR  720
FKFLLVCSVE RDYSSLVRTI LDMMVERDGL MSKESLDMLA EIQLLSRAVK RKNTKMAETL  780
IHYSAKRFIF LPSVKGPGGI TPLHLAASTS GSEDMIDVLT NDPQEIGLSS WNTLIDASGQ  840
TPFSYAAMRN NHGYNTLVSR KLADKRNGQI SLNIENGIDQ IGVSKRLSTE LKRSCNTCAS  900
VALKYQKKVS GTRRLFPTRI IHSMVAVATV CVCVCVFMHA FPIVRQGSHF SWGGLDYGSV  960
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-3096179384squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.169981e-73leaf| seed
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00146589001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013717922.10.0squamosa promoter-binding-like protein 16
RefseqXP_022544968.10.0squamosa promoter-binding-like protein 16
SwissprotQ700C20.0SPL16_ARATH; Squamosa promoter-binding-like protein 16
TrEMBLM4DGV60.0M4DGV6_BRARP; Uncharacterized protein
STRINGBra015732.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39992554
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76580.10.0SBP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]