PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00146565001
Common NameGSBRNA2T00146565001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 428aa    MW: 47876.4 Da    PI: 8.7664
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00146565001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix902.5e-2858142187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW++qe+ aL+++r++m+ ++r++++k+plWeevs+km e g+ r++k+Ckek+en+ k++k++keg+ ++++++  t+++fdqlea
  GSBRNA2T00146565001  58 RWPRQETVALLKIRSDMGIAFRDASAKGPLWEEVSRKMGELGYIRNAKKCKEKFENVYKYHKRTKEGRTGKSEGK--TYRFFDQLEA 142
                          8********************************************************************975544..6*******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.88851115IPR017877Myb-like domain
PfamPF138372.4E-1757143No hitNo description
CDDcd122031.03E-2157122No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MEFGGGTTTT TSAPAEAPPP PQSNDAAAAT EAAAAAATVG AFEVSEEMND RGGFGANRWP  60
RQETVALLKI RSDMGIAFRD ASAKGPLWEE VSRKMGELGY IRNAKKCKEK FENVYKYHKR  120
TKEGRTGKSE GKTYRFFDQL EALETHHQHQ PQPPLRPHNN NSSMFSTPPP VTTTIIPPTT  180
TPSFPNISGD FMSDNSTSSS SSYSTSSDVD IGGGGGRNKK KRKRKWKEFF ERLMKQVVDK  240
QEELQRQFLE AVEKRERERM AREESWRAQE IARINREREI LAQERSMSAA KDAAVMAFLQ  300
KFSEKPNPQV TTAAATANAA NLRHCKNRQW RSDHDNSGVC FLLAVAESGD RGVDKAEDES  360
RFKVSRERTK RTIVGRDISG DEEARIQQEL KEMQREVGEH KQILQESEGE QQEAPSRLQD  420
LSLLPPA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218224KKKRKRK
2219224KKRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00146565001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2301521e-103AK230152.1 Arabidopsis thaliana mRNA for hypothetical protein, partial sequence., clone: RAFL22-85-G13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013650091.11e-152trihelix transcription factor GT-2-like
SwissprotQ391173e-80TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A397YSK71e-140A0A397YSK7_BRACM; Uncharacterized protein
TrEMBLA0A3P6BN001e-140A0A3P6BN00_BRACM; Uncharacterized protein
STRINGBostr.20129s0126.1.p1e-136(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48492553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-90Trihelix family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]