PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00146328001
Common NameGSBRNA2T00146328001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 315aa    MW: 35634.5 Da    PI: 8.9129
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00146328001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.42.2e-1049114155
                  AP2   1 sgykGV.rwdkkrgrWvAeIrd.pseng.......kr..krfslgkfgtaeeAakaaiaarkkleg 55 
                          s ++GV ++++++gr++A+++d  s+n        +      ++g ++ +e Aa+a++ a++k++g
  GSBRNA2T00146328001  49 SSHRGVtSRHRWTGRYEAHLWDkNSWNEtqtkkgrQGlnMVLWIGAYDEEEAAARAYDLAALKYWG 114
                          579****9**************8888666676654115589***********************98 PP
2AP2544.3e-17157208155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  GSBRNA2T00146328001 157 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAARAYDIAAIEYRG 208
                          89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.1950122IPR001471AP2/ERF domain
PfamPF008473.1E-850114IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-1150124IPR016177DNA-binding domain
SMARTSM003801.5E-1850128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-1351123IPR001471AP2/ERF domain
PfamPF008471.6E-12157208IPR001471AP2/ERF domain
CDDcd000187.19E-25157218No hitNo description
SuperFamilySSF541714.9E-18157218IPR016177DNA-binding domain
PROSITE profilePS5103218.874158216IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-18158217IPR001471AP2/ERF domain
SMARTSM003803.4E-26158222IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MAKLSQRNKK IIEDQTIDKT ATASASPVVF KCKRKRKSPP QNAPPQRSSS HRGVTSRHRW  60
TGRYEAHLWD KNSWNETQTK KGRQGLNMVL WIGAYDEEEA AARAYDLAAL KYWGRDTLLN  120
FPLSTYEGDV KEMESHSKEE YIGSLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGRVFG  180
NKYLYLGTYA TQEEAARAYD IAAIEYRGLN AVTNFDVSRY LDLPATKKPN AAASPESPND  240
QTSSDDNNFT KTEVITEPST PPEAIQSRRS FPDDIQTYFE CQDSGKLATE EDVIFGGFNS  300
FISPGLCNEF DYWS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00146328001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527860.0AK352786.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-07-M17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106692.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700
SwissprotA0JPZ81e-134AP2L3_ARATH; AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A3P6C1X90.0A0A3P6C1X9_BRACM; Uncharacterized protein
STRINGBra035137.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-141AP2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]