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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSBRNA2T00146328001 |
Common Name | GSBRNA2T00146328001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
AP2 |
Protein Properties |
Length: 315aa MW: 35634.5 Da PI: 8.9129 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSBRNA2T00146328001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 32.4 | 2.2e-10 | 49 | 114 | 1 | 55 |
AP2 1 sgykGV.rwdkkrgrWvAeIrd.pseng.......kr..krfslgkfgtaeeAakaaiaarkkleg 55
s ++GV ++++++gr++A+++d s+n + ++g ++ +e Aa+a++ a++k++g
GSBRNA2T00146328001 49 SSHRGVtSRHRWTGRYEAHLWDkNSWNEtqtkkgrQGlnMVLWIGAYDEEEAAARAYDLAALKYWG 114
579****9**************8888666676654115589***********************98 PP
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2 | AP2 | 54 | 4.3e-17 | 157 | 208 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g
GSBRNA2T00146328001 157 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAARAYDIAAIEYRG 208
89****99**********99966...3.6*************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 315 aa
Download sequence Send
to blast |
MAKLSQRNKK IIEDQTIDKT ATASASPVVF KCKRKRKSPP QNAPPQRSSS HRGVTSRHRW 60 TGRYEAHLWD KNSWNETQTK KGRQGLNMVL WIGAYDEEEA AARAYDLAAL KYWGRDTLLN 120 FPLSTYEGDV KEMESHSKEE YIGSLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGRVFG 180 NKYLYLGTYA TQEEAARAYD IAAIEYRGLN AVTNFDVSRY LDLPATKKPN AAASPESPND 240 QTSSDDNNFT KTEVITEPST PPEAIQSRRS FPDDIQTYFE CQDSGKLATE EDVIFGGFNS 300 FISPGLCNEF DYWS*
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK352786 | 0.0 | AK352786.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-07-M17. |