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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00146115001 | ||||||||
Common Name | GSBRNA2T00146115001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Dof | ||||||||
Protein Properties | Length: 251aa MW: 27201.8 Da PI: 7.2023 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.2 | 3.7e-38 | 28 | 88 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprC+s ntkfCyynny+ sqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s+ GSBRNA2T00146115001 28 HHQSLKCPRCNSLNTKFCYYNNYNHSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKAKRSK 88 57899*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-32 | 19 | 82 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.1E-32 | 30 | 86 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.199 | 32 | 86 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 34 | 70 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MQDIHDYSMT GEGGDRRMRV HQNNILNHHQ SLKCPRCNSL NTKFCYYNNY NHSQPRHFCK 60 NCRRYWTKGG VLRNVPVGGG CRKAKRSKSK QPPSSSSTST ADKPTAQDGE EKPSSSESSS 120 LPASTSTATA ATAAAAKGVM GADMHNLKLY GNGIEWSTLL GQGSSDGGVF SEMGGFTAAS 180 SIATTPFGFG GNTVQQQFED RTAQVDPTME FEPLDWGSSG ADQTLFDLTS TADNAYWSHQ 240 DQTDLYLPQF * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.26788 | 1e-54 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00146115001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353138 | 1e-106 | AK353138.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-G03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013609466.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.4-like | ||||
Swissprot | Q8LDR0 | 1e-112 | DOF54_ARATH; Dof zinc finger protein DOF5.4 | ||||
TrEMBL | A0A0D3E1N3 | 0.0 | A0A0D3E1N3_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g014360.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4482 | 26 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 1e-96 | OBF binding protein 4 |
Publications ? help Back to Top | |||
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