PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00145412001 | ||||||||
Common Name | GSBRNA2T00145412001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 86aa MW: 9133.56 Da PI: 8.4903 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 80.8 | 1.4e-25 | 1 | 56 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv +r++ed ++++ tYeg+Hnh+ GSBRNA2T00145412001 1 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIApSCPV----QRCSEDMSILISTYEGTHNHP 56 58***************************99**96....67899***************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 2.35E-22 | 1 | 58 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.9E-28 | 1 | 57 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.146 | 1 | 58 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.6E-24 | 2 | 58 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-21 | 2 | 56 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MNDGCQWRKY GQKIAKGNPC PRAYYRCTIA PSCPVQRCSE DMSILISTYE GTHNHPLPLS 60 ATAMASATSA AASMLLSGAS MIFMA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-20 | 1 | 58 | 14 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, trichomes and fruits. {ECO:0000269|PubMed:24884371}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00145412001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430068 | 3e-80 | KF430068.1 Brassica rapa WRKY transcription factor 61 (WRKY61) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013647136.1 | 4e-47 | probable WRKY transcription factor 61 | ||||
Refseq | XP_013660242.1 | 4e-47 | probable WRKY transcription factor 61 | ||||
Swissprot | A0A3Q7GFB5 | 4e-42 | WK72A_SOLLC; WRKY transcription factor 72A | ||||
TrEMBL | A0A078GNE7 | 4e-52 | A0A078GNE7_BRANA; BnaA06g13050D protein | ||||
TrEMBL | M4EA85 | 4e-52 | M4EA85_BRARP; Uncharacterized protein | ||||
STRING | Bra025693.1-P | 7e-53 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15610 | 10 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18860.1 | 3e-37 | WRKY DNA-binding protein 61 |
Publications ? help Back to Top | |||
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