PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00145172001 | ||||||||
Common Name | GSBRNA2T00145172001, LOC106365683 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 149aa MW: 16545.8 Da PI: 7.505 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.8 | 0.00022 | 38 | 75 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R d+ ++++ L++++ + +K + a++L+ A +YI L GSBRNA2T00145172001 38 RKDKAGERISALQQIVSPY-----GKTDTASVLQDALHYIEFL 75 56666689999****9999.....9***************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.175 | 26 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.66E-10 | 37 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-7 | 37 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MEFSREAGMM MENKQNVCSL EENSIKRHKS DLSFSSKRKD KAGERISALQ QIVSPYGKTD 60 TASVLQDALH YIEFLHEQVK VLSAPYLQTM TSATQEELEQ YSLRNRGLCL VPMEYTAGVA 120 QSNGADIWAP VKTPPSPAFG VKSQSPFR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00145172001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353054 | 1e-157 | AK353054.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-J10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013660603.1 | 1e-109 | transcription factor bHLH153 isoform X3 | ||||
Refseq | XP_022563729.1 | 1e-109 | transcription factor bHLH153 isoform X3 | ||||
Refseq | XP_022563730.1 | 1e-109 | transcription factor bHLH153 isoform X3 | ||||
Swissprot | Q7XJU2 | 7e-95 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | A0A397YFY5 | 1e-106 | A0A397YFY5_BRACM; Uncharacterized protein | ||||
STRING | Bra030622.1-P | 3e-96 | (Brassica rapa) | ||||
STRING | Bo8g005780.1 | 1e-104 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3316 | 27 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05710.5 | 3e-97 | bHLH family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106365683 |
Publications ? help Back to Top | |||
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