PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00144343001
Common NameGSBRNA2T00144343001, LOC106352217, LOC106352255
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 128aa    MW: 14021 Da    PI: 10.4846
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00144343001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.91.6e-193164134
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                         C++Cgt+kTplWR gp g+k+LCnaCG+++rkk+
  GSBRNA2T00144343001 31 CAHCGTSKTPLWRGGPAGPKSLCNACGIRNRKKR 64
                         ********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.28E-132465No hitNo description
SMARTSM004012.5E-142577IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.7032561IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.3E-162576IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.46E-143066No hitNo description
PROSITE patternPS0034403156IPR000679Zinc finger, GATA-type
PfamPF003201.1E-173165IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MLDHSDKVSK PRAEDMIEQN KTSSSNEKKT CAHCGTSKTP LWRGGPAGPK SLCNACGIRN  60
RKKRRGVEDK KQQSKKSSSG GGGDLKQRMM DFEMGKRSTV EKQRRKLGEE EQAAVLLMAL  120
SYGSVYA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.285242e-42seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00144343001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325781e-129AC232578.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS013H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151727.18e-90PREDICTED: GATA transcription factor 16-like
RefseqXP_013647336.18e-90GATA transcription factor 16-like
RefseqXP_013647368.18e-90GATA transcription factor 16-like
SwissprotQ9FJ102e-62GAT16_ARATH; GATA transcription factor 16
TrEMBLM4F8K92e-88M4F8K9_BRARP; Uncharacterized protein
STRINGBra037421.1-P3e-89(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50502652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.12e-58GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]